Institut für Biologie

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Adaptation of model organisms and environmental bacilli to glyphosate gives insight to species-specific peculiarities of the shikimate pathway
(2024) Schwedt, Inge; Commichau, Fabian M.
Glyphosate (GS), the active ingredient of the popular herbicide Roundup, inhibits the 5-enolpyruvyl shikimate-3-phosphate (EPSP) synthase of the shikimate pathway, which is present in archaea, bacteria, Apicomplexa, algae, fungi, and plants. In these organisms, the shikimate pathway is essential for de novo synthesis of aromatic amino acids, folates, quinones and other metabolites. Therefore, the GS-dependent inhibition of the EPSP synthase results in cell death. Previously, it has been observed that isolates of the soil bacteria Burkholderia anthina and Burkholderia cenocepacia are resistant to high amounts of GS. In the framework of this PhD thesis, it could be demonstrated that B. anthina isolates are not intrinsically resistant to GS. However, B. anthina rapidly adapts to the herbicide at the genome level and the characterization of GS-resistant suppressor mutants led to the discovery of a novel GS resistance mechanism. In B. anthina, the acquisition of loss-of-function mutations in the ppsR gene increases GS resistance. The ppsR gene encodes a regulator of the phosphoenolpyruvate (PEP) synthetase PpsA. In the absence of a functional PpsR protein, the bacteria synthesize more PEP, which competes with GS for binding in the active site of the EPSP synthase, increasing GS resistance. The EPSP synthase in B. anthina probably does not allow changes in the amino acid sequence as it is the case in other organisms. Indeed, the Gram-negative model organism Escherichia coli evolves GS resistance by the acquisition of mutations that either reduce the sensitivity of the EPSP synthase or increase the cellular concentration of the enzyme. Unlike E. coli, the EPSP synthase is also critical for the viability of Gram-positive model bacterium Bacillus subtilis. This observation is surprising because the enzyme belongs to the class of GS-insensitive EPSP synthases. In fact, the EPSP synthase is essential for growth of B. subtilis. The determination of the nutritional requirements allowing the growth of B. subtilis and E. coli mutants lacking EPSP synthase activity revealed that the demand for shikimate pathway intermediates is higher in the former organism. This finding explains why laboratory as well as environmental Bacilli exclusively adapt to GS by the mutational inactivation of glutamate transporter genes. Here, it was also shown that a B. subtilis mutant lacking EPSP synthase activity grows in minimal medium only when additional mutations accumulate in genes involved in the regulation of aerobic/anaerobic metabolism and central carbon metabolism. The characterization of these additional mutants will help to elucidate the peculiarities of the shikimate pathway in B. subtilis. Moreover, the mutants could be useful to identify the aromatic amino acid transporters that still await their discovery.
Agrogentechnik und Biotechpflanzenproduktion : Entwicklung, Stand und Zukunftspotential
(2016) Kuhn, Ekkehard
Pflanzen sind die Nahrungsgrundlage für Mensch und Tier und werden es bleiben. Was unverfälschte Natur zu bieten hat, konnte nie befriedigen, doch war ein langer, weit in die vorchristliche Zeit zurückreichender Weg zurückzulegen, um von essbaren Wildpflanzen und einfachen Landrassen zu den heutigen Hochleistungssorten bei Getreide, Soja, Raps und anderen zu gelangen. Auch heute ist das Potential der klassischen Pflanzenzüchtung noch keineswegs erschöpft. Genomsequenzierung, auf molekulare Marker gestützte Identifizierung züchterisch wertvoller Merkmale und andere früher unbekannte Methoden können Züchtungsprogramme vereinfachen und die Sortenentwicklung beschleunigen. Es bleibt aber eine prinzipielle Schranke, welche die konventionelle Pflanzenzüchtung von wenigen Ausnahmen abgesehen nicht überwinden kann: Sie kann die Artgrenzen nicht überspringen und bleibt auf die Nutzung des arteigenen Genvorrats angewiesen. Das änderte sich um 1985, als es erstmals gelang, bakterielle Gene in dafür gut geeignete Modellpflanzen wie den Tabak einzuführen und zwar so, dass sie „exprimiert“ wurden, d. h. ein funktionelles Proteinprodukt lieferten und sich stabil an die sexuellen Nachkommen dieser ersten transgenen Pflanzen vererbten. Zehn Jahre später begann der kommerzielle Anbau von herbizidresistentem und wenig später insektenresistentem Mais in den USA und Kanada. Es war die Geburtsstunde der Agrogentechnik. Heute werden transgene Kulturpflanzen dort, wo ihre prinzipiellen Gegner weniger Einfluss haben als hierzulande, auf mehr als 180 Millionen ha Ackerland angebaut. Mehr als eine Milliarde Menschen und ein Mehrfaches an Nutztieren haben sich bis heute von „Genpflanzen“ und daraus hergestellten Nahrungs- und Futtermitteln ernährt. Der Grund für den Erfolg der neuen Technik liegt darin, dass sie messbare wirtschaftliche und ökologische Vorzüge hat, die sich in niedrigeren Umweltbelastungen, höheren Erträgen und deutlichen Einkommensverbesserungen der landwirtschaftlichen Betriebe niederschlagen. Während man die Vorteile der Agrogentechnik heute leicht erkennen kann, sind die ihr zugeschriebenen Risiken spekulativ geblieben. Es gibt weder zwingende theoretische Argumente noch praktische Erfahrungen, die dazu berechtigen, der gentechnischen Pflanzenzüchtung ein gegenüber traditionellen Verfahren größeres Gefahrenpotential zuzuschreiben. Ihre realisierbaren Anwendungen gehen über den gegenwärtig noch dominierenden Anbau herbizid- und insektenresistenter Ackerpflanzen weit hinaus. Sie umfassen Nahrungspflanzen mit erhöhter Krankheitsresistenz, verbesserter Trockentoleranz, besserer Verträglichkeit aus ihnen hergestellter Lebensmittel, ausgeglichenem Gehalt an Aminosäuren, Vitaminen und Spurenelementen ebenso wie Industriepflanzen zur Produktion von Grund- und Wirkstoffen für die Chemie- und Pharmaindustrie. An diesen Entwicklungen arbeiten öffentliche und private Forschungseinrichtungen überall in der Welt. Der Mangel an nutzbarem Ackerland, Trinkwasser und sich abzeichnende Folgen des Klimawandels für die Landwirtschaft erzeugen einen wachsenden Druck zur möglichst wirkungsvollen Nutzung aller verfügbaren Ressourcen. Zwar kann die Agrogentechnik das Welternährungsproblem ebensowenig dauerhaft lösen wie irgendeine andere Technik, solange das exponentielle Wachstum der Erdbevölkerung nicht zum Stillstand kommt. Sie vermag aber die Folgen der Übervölkerung abzumildern; denn sie leistet einen wesentlichen Beitrag zur Verbesserung der Grundversorgung und zu einer effizienteren, die Naturvorräte schonenden Landwirtschaft. Die Verdrängung der konventionellen Sorten durch transgene wird deshalb weitergehen. Transgene Ackerpflanzen der ersten Generation, die überwiegend nur ein transgenes Merkmal tragen, werden gegenwärtig rasch durch modernere Stapelsorten ersetzt, die zwei oder mehrere Transgene exprimieren. Sie sind oft herbizidtolerant und gleichzeitig gegen alle wichtigen Schädlinge resistent, die in den jeweiligen Anbaugebieten vorkommen. Gleichzeitig kommen immer mehr Sorten auf den Markt, die nicht nur für die Produzenten Vorteile haben sondern auch ernährungsphysiologisch wertvoller sind als ihre konventionellen Vorläufer. Am Ende dieser Entwicklung werden die konventionellen Sorten auf dem Agrarweltmarkt kaum noch eine Rolle spielen. Dieses Buch behandelt Geschichte, Methoden, Entwicklungsstand und Zukunftspotential der Agrogentechnik, beschreibt typische Vertreter dieses Kulturpflanzentyps und gibt anhand ausgewählter noch im Versuchsstadium stehender Prototypen einen Ausblick auf die kommende Entwicklung und ihre absehbaren Auswirkungen auf die Tier- und Pflanzenproduktion.
Application of fluorescent proteins for functional dissection of the drosophila visual system
(2021) Smylla, Thomas; Wagner, Krystina; Huber, Armin
The Drosophila eye has been used extensively to study numerous aspects of biological systems, for example, spatio-temporal regulation of differentiation, visual signal transduction, protein trafficking and neurodegeneration. Right from the advent of fluorescent proteins (FPs) near the end of the millennium, heterologously expressed fusion proteins comprising FPs have been applied in Drosophila vision research not only for subcellular localization of proteins but also for genetic screens and analysis of photoreceptor function. Here, we summarize applications for FPs used in the Drosophila eye as part of genetic screens, to study rhodopsin expression patterns, subcellular protein localization, membrane protein transport or as genetically encoded biosensors for Ca2+ and phospholipids in vivo. We also discuss recently developed FPs that are suitable for super-resolution or correlative light and electron microscopy (CLEM) approaches. Illustrating the possibilities provided by using FPs in Drosophila photoreceptors may aid research in other sensory or neuronal systems that have not yet been studied as well as the Drosophila eye.
ATP4 and Wnt-signaling are required for ciliogenesis and left-right axis development of Xenopus
(2012) Walentek, Peter; Blum, Martin
The vertebrate body plan displays left-right (LR) asymmetries of organ placement superimposed on an overt bilaterally symmetrical organization. Symmetry is broken during embryogenesis, and asymmetric gene expression precedes asymmetric organ morphogenesis. The proton/potassium pump ATP4 was shown to play a role in LR-development of the frog Xenopus laevis as well as in other deuterostomes. Two opposing models of symmetry-breakage were proposed, the ?ion-flux? and the ?leftward flow? model. The former proposed that symmetry was broken by LR-asymmetric expression of the a-subunit of ATP4 during cleavage stages. The latter claimed a cilia-based leftward flow at the gastrocoel roof plate (GRP) to take center stage during neurulation, i.e. a day later in development. In the present thesis work, the role of ATP4a in symmetry-breakage was re-addressed and evidence for symmetrical expression and function of ATP4a was gathered. ATP4a was shown to be required for two Wnt-signaling dependent steps during the setup of cilia driven leftward flow at the GRP: (1) Wnt/b-catenin (b-cat) dependent expression of Foxj1 during gastrulation, and (2) Wnt/planar cell polarity (PCP) dependent posterior localization of motile cilia during neurulation. These data challenge the ?ion-flux? hypothesis and argue for a conserved ATP4- and cilia-dependent symmetry-breakage mechanism throughout the vertebrates. Furthermore, the function of Wnt-signaling components was analyzed in the context of GRP-formation: The receptor Frizzled 8 (Fz8) and b-cat were required for Foxj1 expression during gastrulation. Morphogenesis of the GRP, posterior polarization of motile cilia and expression of Xnr1 and Coco in somitic cells were all required for LR-development. Loss of non-canonical Xwnt11b-signaling perturbed these process, suggesting that non-canonical Wnt-signaling branches, in addition to Wnt/PCP, were relevant for LR-development. ATP4-mediated Wnt-signaling was also required for Foxj1 expression and motile cilia in other epithelia during Xenopus development, i.e. the skin, floor plate and the ependymal cell layer. In the floor plate b-cat was required for Foxj1 expression downstream of Hedgehog-signaling. In the skin mucociliary epithelium ATP4a and Wnt/b-cat were required downstream of Notch/Delta-mediated cell-type specification of multiciliated cells. This was also true for a new cell type of serotonergic cells described here, which was characterized morphologically, by analysis of gene expression and response to manipulations of Wnt- and Notch/Delta-signaling. In summary, the data presented in this thesis suggest a conserved function of ATP4a and Wnt-signaling in vertebrate symmetry-breakage and Foxj1-dependent ciliogenesis in Xenopus.
The Bacillus phage SPβ : a model system to study the lysis-lysogeny regulatory network and antiphage defense systems
(2024) Kohm, Katharina; Commichau, Fabian M.
Although bacteriophages are considered the most abundant biological entities on our planet, they are less well-studied compared to their host. Being intracellular parasites, phages rely on the metabolic processes of their bacterial hosts for their replication. Phages that use the host exclusively to produce virions are called virulent phages and the reproduction cycle is called the lytic cycle. The lytic cycle is accompanied by lysis and, thus, the killing of the host cell. Temperate phages can choose between the virulent or lysogenic lifecycle. Lysogeny or the lysogenic cycle is a type of viral reproduction in which no virus particles are produced, instead, the genetic material of the phage is replicated and then passed on to the daughter cells. The viral genome can be present as part of the bacterial chromosome or as a circular or linear plasmid molecule and is referred to as a prophage. Since temperate phages can influence the mutual interactions with other bacteria, growth, metabolic pathways or pathogenicity of their host, it is important to understand how temperate phages control their lysogenic life cycle and which genes are involved. Repression usually occurs through the interaction between a repressor and specific binding sites, which are mostly located in the promoter regions of the lytic genes. SPβ is a temperate phage of the model bacterium Bacillus subtilis. In contrast to its host, many aspects of the life cycle of SPβ have been little studied and many genes have not been assigned a function. Not only are SPβ-like phages widespread within the genus Bacillus and of greater importance to their hosts than previously thought, but they also exhibit a novel lysogeny management system. With regard to the control and regulation of the lysis-lysogeny network, it is already partially known which gene products are involved in the decision, establishment and resolvement of lysogeny. The maintenance and resolvement of lysogeny of SPβ was investigated in more detail in this thesis. To gain more insight into the regulation and control of lysogeny, the SPβ c2 mutant was characterized in this work. This mutant is unable to maintain its lysogenic state when exposed to heat, suggesting the alteration of a key regulatory element. This work demonstrated that the SPβ c2 phenotype is due to a single nucleotide exchange in the mrpR (yopR) gene that renders the encoded MrpRG136E protein temperature-sensitive. Furthermore, it was shown that this protein acts as a repressor of lytic gene expression. This occurs through the binding of the repressor to several conserved elements in the genome of the SPβ prophage. Further biochemical analysis revealed that the G136E exchange makes MrpR less stable and reduces its affinity for DNA binding. Structural characterization of MrpR revealed that the protein is a DNA-binding protein with a similar protein fold to tyrosine recombinases. However, the repressor function is independent of functional recombinase activity. In addition, a mutagenesis approach was used to identify the region within the protein that is essential for the function of the repressor. This work also identified further players in the lysogeny management system, with the YosL protein being crucial for the induction of the lytic cycle. However, YosL cannot activate the lytic cycle of SPβ alone. In addition, the core genome of SPβ-like phages was defined and new integration loci were identified in this work. Apart from a better understanding of lysis-lysogeny regulation and phagehost relationships, the characterization of the SPβ c2 mutant also led to the identification of a previously unknown phage defense system. The defense system is encoded on a plasmid and leads to a decrease in phage titer and a change in plaque morphology. It could be shown that the spbB locus, which ensures the segregation stability of the plasmid and codes for two open reading frames, is also responsible for the resistance to SPβ c2 and related phages. Further studies have shown that the spbB gene and the downstream region, which presumably encodes an RNA element and a terminator, play a crucial role in mediating resistance. The second open reading frame of the spbB locus is irrelevant for the mediation of phage resistance. Overall, this work contributes to a better understanding of the phage-host relationship.
Die Bedeutung von AQUAPORIN INTERACTOR 1 (AQI1) für die Zelltodregulation in Pflanzen
(2014) Glink, Eva Katharina; Pfitzner, Artur J. P.
Programmed cell death (PCD) is an important process during development, senescence and pathogen defence in plants and in animals. It is a genetically regulated and targeted cell suicide of single cells, for benefit of the whole organism. In plants, PCD is of great importance, especially in the course of the “hypersensitive response” (HR). For protecting themselves against harmful intruders, infected plant cells are directly deposed of by PCD. The developing local lesions act as a barrier between host plant and pathogen. This prevents the systemic expansion of biotrophic pathogens within the whole plant. The induction of PCD involves complex signal transduction pathways. Reactive oxygen species (ROS), in particular H₂O₂, play an important role as signal molecules during PCD. The transport of H₂O₂ across cell membranes is conducted by aquaporins. As the vitality of cells depends on intracellular H₂O₂-levels, a spatiotemporal control of this H₂O₂-transport is indispensable. AQUAPORIN INTERACTOR 1 (AQI1) was isolated as a potential regulator of the channel function of aquaporins. AQI1 is a plant protein with sequence homology to the mammal aminoacylase 1. It is known, that aminoacylases catalyse the hydrolysis of acyl-amino acids. However, the physiological function of these enzymes is still unclear. This study represents the first characterisation of an aminoacylase (AQI1) in plants. The physiological function of AQI1 as a regulator of aquaporins, as well as the underlying molecular mechanisms, have been analysed. In addition to deacetylation of amino acids, a second function of the protein AQI1 was discovered. AQI1 interferes with the channel activity of aquaporins by protein-protein interaction. In this way, AQI1 is able to inhibit the H₂O₂-, and to a certain extent also the H₂O-influx, through aquaporins. Probably, this happens by blocking the aquaporinpore. Due to this function, AQI1 is a major component in cell death regulation in plants. During the „hypersensitive response“ (HR), which is induced as a result of pathogen attack, AQI1 accumulates to high levels to prevent the influx of toxic amounts of H₂O₂ into neighbouring cells. This ensures a local control of PCD. In addition, AQI1 seems to be involved in regulation of senescence processes. It could be demonstrated, that AQI1 accumulates in a gradient from juvenile to senescent leaves, due to degradation in older tissues. By this age-dependent accumulation, AQI1 could contribute to the vitality of leaves, by preventing the influx of excessive amounts of H₂O₂ into the cell.
Die Bedeutung von Aquaporin interagierenden Proteinen für die Zelltodregulation bei Pflanzen und Tieren
(2020) Straub, Anna Katharina; Pfitzner, Artur J. P.
Hydrogen peroxide plays a crucial role as a signalling molecule in the induction of cell death in plants and animals. To mediate signalling and induce apoptosis in a cell, hydrogen peroxide molecules need to be transported across different membranes to their target site. In plants and animals, integral membrane proteins called aquaporins, facilitate the transport of hydrogen peroxide between cell compartments by channelling the signalling molecule across membranes. Plant aquaporins are regulated by proteins called Aquaporin Interactor 1 and 2 (AQI1 and AQI2). AQI2 is a plant homolog of AQI1. Both proteins function as inhibitors of aquaporins by binding to the channels resulting in prevention of water and hydrogen peroxide influx. Aquaporin Interactor 1 binds preferentially to the aquaporin tonoplast intrinsic protein TIP1.1, while Aquaporin Interactor 2 exhibits a binding preference to the aquaporin plasma membrane intrinsic protein PIP2.2. Aquaporin Interactor 1 is located in the vacuole or associated to the tonoplast membrane. In contrast, results obtained for Aquaporin Interactor 2 suggest that it is located in the apoplast. This is compatible with the hypothesis that tonoplast aquaporins can be regulated by AQI1, whereas plasma membrane aquaporins on the other hand are regulated by AQI2. The enzyme Aminoacylase 1 is known to hydrolyse N-acetylated amino acids. It is a zinc-binding metalloenzyme with a wide range of substrates. However, its preferred substrate is N-acetyl-Methionine. N-acetyl-Methionine can also be hydrolysed by the plant homolog AQI1. The plant enzyme also needs metal ions as co-factors. Of note, no aminoacylase activity was found for AQI2. Experiments using aqi1 knock-out mutants of Arabidopsis thaliana and Nicotiana tabacum clearly show, that hydrolysis of N-acetyl-Methionine can only be accomplished by AQI1. However, the aminoacylase activity of AQI1 is not needed for the ability to bind to aquaporins. The data show that the aminoacylase activity and the ability to bind aquaporins are two separate functions of the protein Aquaporin Interactor 1. Based on current knowledge, it must be assumed, that AQI2 acts only as an aquaporin-regulating protein. After pathogen attack an increased aminoacylase activity could be detected in the affected plant tissue. This AQI1 induction can be observed both after agrobacteria infiltration and after infection with the tobacco mosaic virus. This suggests a role for AQI1 in pathogen defence. Another aquaporin interacting protein is BHRF1, an anti-apoptotic protein originating from the Epstein-Barr virus. To date, an interaction between BHRF1 and aquaporins could only be detected with plant aquaporins. Transgenic BHRF1 N. tabacum plants show spontaneously occurring cell death events apparent by necrotic plant tissue. These necrotic areas are caused by BHRF1 interacting with plant aquaporins and several proteins of the G-protein signalling pathway inducing cell death. By binding to the aquaporins, BHRF1 is able to replace the endogenous aquaporin interaction partners AQI1 and AQI2. Thus, a precise aquaporin regulation by endogenous AQI1 and AQI2 is no longer guaranteed. Moreover, results show that BHRF1 can bind the Arabidopsis glucose sensor AtRGS1 (regulator of G-protein signalling). AtRGS1 is a combination of a G-protein coupled receptor and a RGS protein. The RGS domain causes the hydrolysis of GTP bound to the Gα subunit. Further experiments showed, an interaction of BHRF1 with human RGS proteins. Therefore, BHRF1 could also have a possible effect on G-protein signalling in humans. The results of this study demonstrate the importance of a precise regulation of aquaporins in cell death regulation. Deregulation caused by viral BHRF1, leads to cell death events. BHRF1 presumably competes with the endogenous interaction partners of aquaporins and of the G-protein-signalling pathway, ultimately resulting in the deregulation of various signalling pathways.
Die Bedeutung von Aquaporinen und ihren Interaktionspartnern für die Zelltodregulation in Pflanzen
(2011) Hoch, Tanja; Pfitzner, Artur J. P.
Programmed cell death (PCD, apoptosis) is an induced cell suicide process that plays an important role during the differentiation and pathogen defense responses of plants and animals. BHRF1 (?BamHI fragment H rightward open reading frame no. 1?) is a cell-death modulating protein of the Epstein-Barr virus (EBV), a human lymphotrophic herpes virus. The expression of BHRF1 in transgenic plants led to the formation of necrotic lesions. Further experiments showed that BHRF1 associated necrotic lesions are caused due to stress, senescence and pathogen defense responses. Yeast-two-hybrid-screening of a tobacco cDNA library identified two different aquaporins as partners for interacting with BHRF1. Aquaporins were identified as water channels/carriers within red blood cells, but are also present in all other organisms. Over the last years, more information was gathered indicating that, apart from transporting water, aquaporins had other functional activities. E. g. Henzler and Steudle (2000) demonstrated that aquaporins can act as hydrogen peroxide channels in the algae Chara corallina. Furthermore, publications by Bienert et al. (2006), indicating that aquaporins in plants as well as in animals are also able to transport H2O2. Hydrogen peroxide and other reactive oxygen species (ROS) have long been recognized as important signal molecules during the pathogen defense response in plants, therefore establishing a logical connection between cell death and aquaporins for the first time. It was assumed that the aquaporins NtPIP2.2a, NtPIP2.2b und NtTIP1.1a identified during the yeast-two-hybrid-screen can act as H2O2 channels. In further experiments it could indeed be established that these aquaporins have the ability to transport H2O2 in yeast cells. Yeasts expressing aquaporins could be influenced in their H2O2 sensitivity by the expression of BHRF1. BHRF1 without transmembrane domain (BHRF1deltaTMwt) led to an enhanced H2O2 sensitivity and also to an increase in cell death. In addition, the transient expression of aquaporin could induce necrotic lesions and cell death in Nicotiana benthamiana. Deletion experiments identified a common binding domain for interacting with BHRF1 in these aquaporins. This binding domain consists of the conserved region containing the first NPA motive (?loop? B) that is also half of one pore. Further studies showed that BHRF1 interacts with all kinds of different aquaporins from plants, animals (rAQP8) and humans (hAQP1). BHRF1 most likely binds with the alpha3 helix to the highly conserved NPA region of aquaporins. A cellular protein showing sequence homology to M20 proteases and aminoacylases was isolated when looking for interaction partners of aquaporins in plants. Like BHRF1, this protein binds to the conserved NPA region of the aquaporins. Although the cellular substrate for this protein has to be found yet, an interesting observation was made. Co-expression of the isolated aminoacylase with NtTIP1.1a or NtPIP2.2b in Nicotiana benthamiana led to the inhibition of cell death induced by these aquaporins.
Der Beitrag von Neurofascin zur Entstehung und Lokalisation von Gephyrinclustern während der inhibitorischen Synaptogenese im ZNS
(2008) Burkarth, Nadine; Volkmer, Hansjürgen
Membrane-bound cell adhesion molecules (CAMs) were discovered to be key players in initiating excitatory synapse formation in the CNS. However, so far little is known about the role of CAMs in inhibitory synapse development. In particular, a functional link between CAMs and the clustering of postsynaptic scaffold component gephyrin, which is a critical determinant of y-aminobutyric acid A (GABAA) clustering, still needs to be elaborated. Neurofascin belongs to the L1-subgroup of the immunoglobuline like CAMs (IgCAMs). In vivo Neurofascin has been shown to direct the formation and localization of GABAergic Input on cerebellar Purkinje neurons. Thus it serves as a candidate molecule recruiting gephyrin to inhibitory postsynaptic sites. At early stages of inhibitory synaptogenesis, formation of gephyrin clusters and their translocation to the axon hillock correlated with a somatic expression of neurofascin in rat hippocampal neurons. Furthermore, a neurofascin splice variant lacking the extracellular fifth fibronectine-III like domain (NF-5te FN-III) was predominantely expressed at early stages of synapse formation. In contrast expression of NF+5te FN-III harbouring the fifth fibronectine-III like domain was prominent only in adult brain. Transfection of expression vectors for different splice variants and deletion mutants of neurofascin revealed that the embryonic neurofascin isoform NF-5te FN-III is required for the formation of gephyrin clusters. This process is presumably dependent on extracellular interactions with molecules on pre- and postsynaptic terminals, respectively. However, possible interaction partners for neurofascin are unknown. Point mutations in the cytoplasmatic domain of neurofascin inhibited the formation of gephyrin clusters suggesting intracellular signal transduction pathways triggered by neurofascin. Furthermore, expression of neurofascin is necessary for the translocation of gephyrin clusters to the axon hillock of hippocampal neurons as shown by shRNA-mediated knockdown. In addition, overexpression of an embryonic neurofascin isoform was sufficient for functional rescue after knockdown of endogenous neurofascin. Expression of NF-5te FN-III resulted in the accumulation of exogenous GFP-Gephyrin at the axon initial segment AIS suggesting a functional link between neurofascin and gephyrin. However, colocalization studies in HEK293 and PC12E2 cells, respectively, did not provide an indication of direct neurofascin gephyrin interactions leading to the observed effects.
Biogenese und Virusassembly des filamentösen Coliphagen M13
(2012) Ploß, Martin; Kuhn, Andreas
Taxonomically, the bacteriophage M13 is assigned to the single-stranded DNA phage and belongs to the family of Inoviridae. For propagation the Gram-negative bacteria Escherichia coli with F-pili is required. The host cell is not lysed by the phage. New findings about the M13 phage biogenesis are presented here within four essential areas of the M13 phage cycle concerning the sections infection, assembly, and phage secretion. Phage adsorption experiments in which the host bacterium E. coli K38 was infected by M13 phage showed that the phage adsorption to the cells takes place within the first 5 minutes and because of a limitation of F-pili per cell a maximum of 7 phages per cell were found to be adsorbed. The insertion of the phage coat protein gp9 into the cytoplasmic membrane of the host cell was verified by the periplasmic location of antigenic epitopes introduced into the N-terminal domain of gp9. The membrane insertion of gp9 was found to depend on the host protein YidC. Plasmid-encoded gp9 exhibiting antigenic epitopes at the N-terminal domain did not interfere with the assembly of new progeny phage. Therefore, the development of a phage display system with gp9 by introducing short peptide sequences (17 ? 36 amino acids) is feasible. After overexpression of gp1/11 assembly complexes in E. coli and size exclusion chromatography, respectively, the complex was characterized and a molecular weight of ~ 300 kDa was assigned. Examinations of the purified gp1/11 assembly complexes by transmission electron microscopy (TEM) revealed ring-like structures with ~ 7 ? 8 nm in inner diameter and ~ 11 ? 12 nm in outer diameter. The investigation of M13 wild-type infection showed that the secretion of new progeny phage starts after a short lag period (eclipse). An infected E. coli cell secreted upto 925 progeny in a time period of 115 minutes which corresponds to an average of 7 secreted phages per minute. The generation time of the infected E. coli K38 cells rose from 24 minutes to 48 minutes. Experiments were carried out with genetically manipulated phages which were hindered to synthesize the major coat protein gp8 in the host cell by a nonsense mutation in the phage genome. Therefore, phage replication was only observed in host cells bearing plasmid encoding gene 8. Since the quantity of the protein was limited the lag period (eclipse) was extended to 12 minutes and the efficiency of phage secretion was decreased to about 2 phages per minute. The M13 phage secretion from infected E. coli cells was visualized by atomic force microscopy (AFM). The identity of the phage was verified by labeling with protein-A conjugated gold and transmission electron microscopy (TEM). The secretion of M13 progeny was first observed at the cell poles of E. coli and then spreaded within 4 minutes along the cell surface. After 16 minutes the secretion was observed over the entire cell surface.
Cellular stress regulates fibroblast growth factor 23 (FGF23) und αklotho
(2023) Münz, Sina; Föller, Michael
Cellular stress is defined as the impairment of regular cell function by internal or external stimuli including critical temperatures, energy deficiency, infections, mechanic injury, or chemical noxae. The present thesis aims to investigate the influence of cellular stress on the expression of FGF23 and αklotho. FGF23 is predominantly produced in bone and regulates the phosphate excretion in the kidney. Thereby, αklotho functions as a co-receptor for FGF23. By binding to the FGF receptor-αklotho complex, FGF23 reduces the reabsorption of phosphate from the tubular lumen by decreasing the abundance of sodium-phosphate co-transporters. Furthermore, FGF23 decreases the synthesis of 1,25(OH)2D3, active vitamin D, and increases its degradation. 1,25(OH)2D3 is a regulator of intestinal phosphate absorption and therefore, FGF23 additionally reduces dietary phosphate uptake. Chronically elevated FGF23 is associated with numerous disorders such as kidney disease or CVD. Beside its function as a co-receptor of FGFR, αklotho has many beneficial FGF23-independent functions. It has originally been identified as an anti-aging hormone, as a loss-of-function mutation in the αklotho gene causes numerous aging-like symptoms such as vascular and tissue calcification, osteoporosis, sterility, and an early death. The present papers investigated the influence of cytostatic drugs cisplatin, paclitaxel, and doxorubicin as well as apoptosis inducers PAC-1 and serum depletion on the regulation of FGF23 and αklotho. In UMR106 rat osteoblast-like osteosarcoma cells, a 24 or 48 h-treatment with cisplatin, doxorubicin, PAC-1, or serum reduction and depletion significantly up-regulated Fgf23 expression. Under serum depletion, also FGF23 protein secretion was increased. In addition to FGF23, cisplatin and doxorubicin also increased gene expression of pro-inflammatory cytokine Il6 hinting at the presence of necrotic cell death. By inhibiting Il-6 membrane receptor gp130 it has been shown, that FGF23 stimulation partially depended on IL-6 signaling. The stimulation of FGF23 by inflammatory mediators including IL-6, TNFα, TGF-β, or IL-1β has already been reported by others. Furthermore, inflammatory diseases such as rheumatoid arthritis, CKD, or inflammatory bowel disease are associated with excess FGF23 serum concentrations. In this regard, we investigated gene expression and activation of the transcription factor NFκB, which regulates numerous inflammatory functions. Cisplatin and doxorubicin increased the expression of NFκB subunit Rela and cisplatin also stimulated the phosphorylation of NFκB. Independently, NFκB inhibitors wogonin and withaferin A attenuated cisplatin-mediated stimulation of FGF23 indicating, that FGF23 excess was in part promoted by NFκB signaling. These investigations confirmed a strong impact of cisplatin or doxorubicin-induced inflammation on FGF23 synthesis, whereas PAC-1 and serum depletion have reported to directly induce apoptosis, which is commonly not associated with inflammation. Known factors, induced by all cytotoxic substances used here, are the formation of ROS and activation of HIF1α. Both are positive regulators of FGF23, leading to the conclusion, that cellular stress might regulate FGF23 via HIF1α or oxidative stress. FGF23 excess results in increased bone resorption and suppressed bone formation. Likewise, also chemotherapeutic drugs and serum deficiency reduce bone density. Therefore, the stimulation of FGF23 may cause or further stimulate bone resorption. In paper 2, the influence of the cytostatic drugs cisplatin, paclitaxel, and doxorubicin as well as apoptosis inductors PAC-1 or serum depletion on αklotho expression in renal MDCK, NRK-52E, and HK-2 cells has been investigated. In fact, all cytotoxic compounds stimulated gene expression of αklotho while decreasing cell proliferation and viability. By using a combined apoptosis and necrosis assay, we confirmed the induction of apoptosis but also necrosis to a variable extent. Additionally, the transcriptional regulation of apoptotic proteins of the BCL-2 family was assessed and confirmed apoptosis stimulation. Transcription factor PPARγ is a known positive regulator of αklotho. In MDCK cells, we detected a significant influence of cisplatin-mediated stimulation of PPARγ mRNA on the αklotho increase. Furthermore, cisplatin, doxorubicin, PAC-1, and serum deprivation also up-regulated FGFR production in MDCK cells. In cancer cells, overexpression of FGFR is associated with enhanced resistance against chemotherapeutic drugs. Consequently, αklotho and FGFR1 stimulation may be a protective mechanism to prevent hyperphosphatemia during diseases. However, human HK-2 cells treated with cisplatin, paclitaxel, doxorubicin, or serum depletion significantly down-regulated αklotho expression and protein secretion. PAC-1 did not change the expression or production of αklotho in HK-2 cells, which might be explained by the minor effect of PAC-1 on non-carcinogenic cells lacking an overexpression of procaspase-3. The differential regulation of αklotho in MDCK and NRK-52E versus HK-2 cells by cytotoxic stress might have numerous causes. For instance, there is evidence of an increased sensitivity of HK-2 cells to stress stimuli but a better comparability to the animal model. However, immortalized cell lines can not completely reflect the conditions of native tissue especially with regard to cell death. Furthermore, the species, sex or age of the donor organism as well as passage number of the cells and drug transporter expression might impact αklotho regulation. Additionally, the mode of cell death determined by intracellular ATP homeostasis and its regulation of AMPK might play an important role in αklotho regulation. However, all these theories need to be further addressed. In summary, inflammation, ROS formation, or the activation of HIF1α are all reported to correlate in a negative manner with αklotho production or serum levels. αklotho down-regulation may be a tool to increase cell proliferation or prevent hypophosphatemia. In contrast, AMPK activation by intracellular ATP restriction may positively regulate αklotho to promote cell protection and avoid hyperphosphatemia.
Charakterisierung der akzessorischen Proteine vom felinen Coronavirus (FCoV) mit monoklonalen Antikörpern
(2014) Lemmermeyer, Tanja; Pfitzner, Artur J. P.
Little is known about the expression and function of the FCoV accessory proteins 3a, 3b, 3c, 7a and 7b. These proteins of FIPV strain 79-1146 were investigated in the present study. The obtained results are outlined: 1. The accessory FCoV proteins 3a, 3c and 7b were expressed in E. coli with a C-terminal his-tag. Furthermore the proteins 3a, 3b, 3c, the C-terminal half part of 3c, 7a, 7b as well as 7b without the amino acids 1 to 17 (7bdeltaSS) were expressed as fusion proteins with an N-terminal GST-tag and a C-terminal his-tag. The purification of all fusion proteins was performed by Ni2+ ion affinity chromatography under denaturing conditions. 2. To generate monoclonal antibodies the purified fusion proteins 3c and 7b were used for immunization of mice. ELISA screenings were established which enabled the identification of hybridoma cells that produce mabs against 3c and 7b. 3. The characterization of the anti-3c mabs led to the identification of regions in the C-terminus of the protein. The 3c protein could not be detected in an eukaryotic inducible expression system (Tet-on cell line BHKFIPV-3c) and also not in FCoV-infected cells. The anti-7b mabs bound within the region of amino acids 58 to 75 and reacted with a recombinant 7b fusion protein of a serotype I FCoV. 4. The expression of the 7b protein in infected cells was confirmed by western blot. An N-glycosylation site is located within the binding region. After incubation with tunicamycin the signal obtained with the anti-7b mabs was considerably stronger. Again after tunicamycin treatment the 7b protein was detected in the cytoplasm of infected cells by indirect immunofluorescence. The 7b protein colocalized partially with the ER. 5. The recombinant 7b protein was detected with all of the anti-FIPV 79-1146 sera and the ascites, but not with the anti-FECV 79-1683 sera. In contrast the recombinant fusion proteins 3a, 3b, 3c and 7a were not detected with the analyzed anti-FCoV sera.
Charakterisierung der lichtinduzierten Internalisierung des Ionenkanals TRPL aus Drosophila melanogaster
(2012) Oberegelsbacher, Claudia; Huber, Armin
The light-dependent isomerization of rhodopsin (Rh1), which takes place in the compound eyes of Drosophila, leads to the activation of the visual signaling cascade. The result is a depolarizing receptor potential caused by the Ca2+-influx through the two cation channels TRP and TRPL. This Ca2+ influx subsequently mediates a change in the subcellular localization of the TRPL channel by inducing its translocation. TRPL of dark-adapted flies is located inside the rhabdomeres, whereas upon illumination, TRPL translocates to a yet unidentified storage compartment in the cell body of the photoreceptor cell. The translocation is reversible; however, the underlying mechanism remains largely unclear. Based on the observation of TRPL-containing vesicles on immunocytochemical sections of illuminated flies a vesicular transport mechanism has been proposed for TRPL translocation. In the present work, the mechanism underlying light-dependent TRPL internalization was studied. Using immunocytochemical techniques, a co-localization of rhodopsin and TRPL was observed in endocytic vesicles. Like many other G-protein coupled receptors, Rhodopsin undergoes endocytosis following activation. The rate of Rh1 internalization depends on the amount of metarhodopsin and, therefore, on the light quality used for illumination. The internalization rate was determined by counting Rh1- and TRPL-positive vesicles observed upon illumination with different light qualities. Surprisingly, the light quality that induced the highest number of Rh1-positive vesicles (i.e. blue light) caused the lowest number of TRPL-positive vesicles, while illumination with orange light induced strong TRPL internalization, but poor Rh1 endocytosis. Likewise, time courses of TRPL internalization were significantly faster in orange light compared to blue light. These findings may indicate a competition between TRPL and Rh1 for a common internalization factor. Analysis of endocytosis in different mutants showed that the internalization of TRPL required Ca2+ influx mediated by the activation of the phototransduction cascade, whereas internalization of Rhodopsin was Ca2+-independent. Therefore, the trigger for activating TRPL and Rh1 endocytosis seems to be different, although both types of internalization were mechanistically similar and depended on dynamin function. The internalization of Rhodopsin is mediated by Rab5. A screen of dominant negative Rab mutants revealed that the light-induced internalization of TRPL is mediated by Rab5 and RabX4. Accordingly, the involvement of Rab5 constitutes another common feature in the endocytosis of TRPL and Rh1. Arrestins play an important role in regulating the endocytosis of rhodopsin. Whereas arrestin2 mediates the inactivation of metarhodopsin, arrestin1 is responsible for subsequent rhodopsin endocytosis. The endocytosis of TRPL is independent of arrestins, but arrestin2 fulfills an important function regarding the stability of the TRPL protein in the rhabdomere. In the present work, the analysis of different arr2 alleles revealed a complete degradation of the TRPL protein after ten days in darkness, but not in light. This finding suggests that arrestin2 has a possible function as a scaffolding protein in the rhabdomer of dark-adapted flies, but not of light-adapted flies, when TRPL is located in a storage compartment in the cell body. There is another fundamental difference between the two transport mechanisms regarding the fate of the protein after it has been internalized. Rhodopsin undergoes rapid lysosomal degradation whereas the trafficking of TRPL is described as a recycling mechanism. In this work, it was possible to show colocalization of TRPL with recycling endosomes indicating an involvement of these compartments in TRPL trafficking. Furthermore, rhodopsin but not TRPL showed colocalization with a lysosomal marker in light-adapted flies, providing additional evidence for the recycling of the TRPL channel.
Delimitation of the organizer from the posterior notochord : descriptive and functional studies in mouse and African clawed frog
(2009) Andre, Philipp; Blum, Martin
During vertebrate development, gastrulation is probably the most important phase, as the future body plan is established. Thereby the three body axes anterior-posterior, dorsal-ventral and left-right are determined as well. A central role thereby is taken by the Spemann organizer, as this part of the embryo governs the above mentioned processes. The left-right axis is specified by an extracellular leftward fluid-flow, which results in asymmetric gene expression of the TGFβ factor Nodal. In mice the ciliated epithelium responsible for the fluid-flow as well as the organizer are denominated as ?node?. In contrast to that two distinct entities are thought to be responsible for organizer function and fluid-flow in zebrafish, Xenopus and rabbit embryos. In the present study, it could be shown that this also applies for mouse embryos. In order to prevent further confusion the ciliated epithelium responsible for the fluid-flow was denominated as posterior notochord (PNC) as it is in continuity with the notochord but located anterior to the organizer (?node?). The latter is characterized by the expression of the homeobox gene Goosecoid (Gsc). Gsc possesses, like the tissue of the organizer, the potential to induce an almost complete axis and became therefore famous as ?the organizer gene?. However upon knockout of Gsc in the mouse, surprisingly no gastrulation defects could be detected. Therefore the function of Gsc during gastrulation was investigated using a gain-of-function approach. The analysis of this, in the present and previous studies, indicated that Gsc acts as a switch between two modes of cell movement. Accordingly, Gsc promotes active cell migration and inhibits convergent extension movements. Furthermore it was investigated whether the monoamines adrenaline and serotonin have an influence on the cilia and thus on the leftward fluid-flow, as it was reported in rat and Xenopus experiments. Thereby it could be detected that the addition of adrenaline led to a reduction of the ciliary beat frequency (CBF) and therefore the fluid-flow was attenuated. In contrast to that the addition of serotonin or its antagonists resulted only in minor changes of CBF and thus had no measurable effect on the fluid-flow. The consequences of a malformed PNC were analyzed using embryos mutant for Brachyury (T). Thereby, it was shown that embryos homozygous for this mutation did not develop a functional PNC and thus lacked the fluid-flow. Furthermore a possible cause for the absence of asymmetric Nodal in these embryos was brought into context of an attenuated expression of Fgf8. This indicated that T possesses two distinct roles in left-right development. On the one hand it is necessary for the correct formation of a PNC and on the other hand it is probably needed to maintain the expression of Fgf8, which is a prerequisite for the transcription of Nodal. Finally it was investigated whether these functions were conserved from the African clawed frog Xenopus. Thereby, it could be shown, that Xbra, the homologous gene of T in Xenopus, was also necessary for the formation of the gastrocoel roof plate, the homologous structure of the PNC. Additionally it was observed that the absence of Xbra led to an attenuation of Nodal expression in the midline of Xenopus embryos. This implied that not only the function of Brachyury, but also the process of laterality determination is highly conserved between mammals and amphibians.
Determination of Laterality in the Rabbit Embryo: Studies on Ciliation and Asymmetric Signal Transfer
(2007) Feistel, Kerstin; Blum, Martin
The midline of the vertebrate embryo plays a pivotal role in the regulation of left-right (LR) asymmetry. In mammals recent interest has focused on a structure situated at the caudal part of the notochord, the posterior notochord (PNC), which is homologous to Kupffer?s vesicle (KV) in fish and the gastrocoel roof plate (GRP) in frog. Despite highly diverging embryonic architecture, the PNC/KV/GRP is the site where motile monocilia set up a directional fluid flow, an event indispensable for the generation of LR asymmetry. Signals created at the PNC/KV/GRP need to be transferred to the periphery of the embryo, where they initiate the left-specifying program in the left lateral plate mesoderm (LPM). In this study morphogenesis and ciliogenesis of the notochordal plate as well as the signaling processes between midline and LPM were studied in the rabbit embryo. Rabbit development progresses through a flat blastodisc phase and represents the typical mode of mammalian embryogenesis. Transcription of ciliary marker genes, the first sign of beginning ciliogenesis, initiated in Hensen?s node and persisted in the nascent notochord. Cilia emerged on cells leaving Hensen?s node anteriorly to form the notochordal plate. Cilia lengthened to about 5µm and polarized from an initially central position to the posterior pole of cells. Electron microscopic analysis revealed 9+0 and 9+2 cilia and a novel 9+4 axoneme intermingled in a salt-and-pepper-like fashion. These data showed that the ciliogenic gene program essential for laterality determination is conserved at the midline of the rabbit embryo. The present study also provided evidence that initiation as well as repression of the Nodal cascade crucially depended on communication between midline and lateral plate (LP). Separation of LP tissue from the midline before, during and after the 2 somite stage demonstrated that signals from the PNC induced and maintained the competence of LPM to express Nodal. Signals from the midline were necessary after the 2 somite stage to maintain a right-sided identity, i.e. absence of Nodal expression. Gap-junction-dependent intercellular communication (GJC) was shown to play a central role in this process. Previously, GJC had been involved in LR axis determination in cleavage stage frog embryos and early blastodisc stages in chick. This study for the first time demonstrates the role of GJC in mammalian embryos. GJs regulate the signaling between midline and periphery: permeable gap junctions were required specifically at the 2 somite stage to repress Nodal induction in the right LPM, whereas closed GJs were a prerequisite for Nodal signaling on the left side. Establishment of the right-sided fate depended on FGF8, the signaling of which was regulated by the opening status of GJs. A 3-step model is proposed for symmetry breakage and induction of the LR signaling cascade in vertebrates: (1) Nodal protein synthesized at the lateral edges of the PNC diffuses bilaterally and confers competence for the induction of the Nodal cascade to the LPM, (2) at the same time the left-specific cascade is actively repressed by action of the GJC/FGF8 module, and (3) following the onset of leftward flow at the PNC repression gets released specifically on the left side at the 2 somite stage, presumably by transient inhibition of GJC. This model not only is consistent with the presented data, but also with published work in other model organisms.
Effects of overexpression of NIMIN genes on salicylic acid-mediated PR-1 gene activation and phenotype in Nicotiana benthamiana (Domin)
(2013) Masroor, Ashir; Pfitzner, Artur J. P.
Systemic acquired resistance (SAR) is a whole plant resistance mechanism, launched after initial exposure to a necrotizing pathogen. At molecular level, SAR is characterized by elevated level of plant hormone salicylic acid (SA) and induction of pathogenesis-related (PR) proteins. During SAR, SA signal is transduced through regulatory protein NPR1 (Non-Expressor of PR Genes1; also known as NIM1 or SAI1) leading to the induction of the SAR marker PR-1. Present data strongly suggest that the SA signal is directly perceived by NPR1. NPR1 interacts with two classes of proteins. DNA binding TGA factors link the SA sensor NPR1 to the as-1 like cis-acting elements present in the promoter region of PR-1 gene. In addition, NPR1 interacts with NIM1-interacting (NIMIN) proteins. In Arabidopsis, there are four NIMIN genes, i.e., NIMIN1, NIMIN1b, NIMIN2 and NIMIN3. Initially, it was hypothesized that, although structurally related to each other, NIMIN proteins might play diverse functions during SAR response. Indeed, it has been shown that the NIMIN genes are expressed differentially and that the encoded proteins interact differentially with NPR1. Based on these observations, NIMIN proteins have gained much attention. The functional significance of NIMIN proteins in SAR pathway has been addressed in overexpression studies. Overexpression of NIMIN1 yielded strong suppression of PR gene induction and enhanced susceptibility to a bacterial pathogen in transgenic Arabidopsis. Apart from NIMIN1, the functional significance of other Arabidopsis NIMIN family members has not yet been addressed. Therefore, present research is conducted to explore the biological significance of other NIMIN family members from Arabidopsis as well as tobacco. To this end, transient gene expression in a N. benthamiana reporter line containing a -1533PR-1apro:GUS construct was employed. The research achievements of this work are listed below. 1. The N. benthamiana infiltration procedure was optimized for reliable determination of -1533PR-1apro:GUS reporter gene activation in presence of different Agrobacterium strains. 2. After optimization, transient gene expression system (TGES) was successfully used to uncover the functional significance of NIMIN proteins on SA-mediated PR-1a gene induction. NIMIN1 and NIMIN1b are categorized as strong, NIMIN3 as an intermediate and NIMIN2 as a non-suppressor of SA-mediated PR-1a reporter gene activation. 3. Interestingly, suppressing NIMIN1, NIMIN1b and NIMIN3 all contain an EDF (glutamic acid, aspartatic acid, phenylalanine) motif. Therefore, EDF mutants were generated in NIMIN1 and NIMIN3, i.e., NIMIN1 E94A D95V and NIMIN3 E63A D64V, respectively. Yeast two-hybrid (Y2H) data show that NIMIN1 E94A D95V still interacts with NPR1, while NIMIN3 E63A D64V interaction with NPR1 could not be validated due to undetectable accumulation of the mutant fusion protein in yeast. In the TGES, NIMIN1 E94A D95V and NIMIN3 E63A D64V were not able to suppress the SA-mediated PR-1a promoter activation. The data support the fact that the EDF motif may have a function in NIMIN proteins interaction with NPR1, thereby, regulating PR-1 gene induction. 4. EAR domain is generally considered as a repression domain and also exists in NIMIN proteins. The deletion mutants, i.e., NIMIN1 1/137 and NIMIN1b 1/135 still suppress the SA-induced -1533PR-1apro:GUS gene activation. On the other hand, NIMIN1 L138A L140A and NIMIN3 L108A L110A do not suppress the SA-mediated reporter gene induction. But that is because of low overall accumulation of mutant proteins in N. benthamiana leaf tissues. Thus, the data support the view that EAR domain is not the only repressional domain active in NIMIN proteins. 5. Like Arabidopsis, tobacco also contains NIMIN genes. During this study, a novel NIMIN gene from tobacco, NIMIN-like1, was cloned and characterized. Using Y2H analyses, it was shown that NIMIN-like1 binds to NgNPR1 and that interaction is sensitive to SA. Thus, NIMIN-like1 falls into the tobacco NIMIN family. Thereafter, functional significance of diverse tobacco NIMIN proteins for their effects on SA-mediated PR-1a gene induction via TGES was carried out. NIMIN2c and NIMIN-like1 are categorized as strong suppressors, whereas NIMIN2a is a weak suppressor of SA-mediated PR-1a reporter gene induction. 6. NIMIN1 and NIMIN3 overexpression manifests cell death in N. benthamiana, and cell death is accompanied by the accumulation of H2O2. No correlation was found between NIMIN proteins binding intensity to NPR1 and cell death. Similarly, no correlation was found between PR-1a reporter gene suppression and cell death. The data support the view that the EDF and EAR motifs are not involved in cell death phenomenon. Based on previous and data gathered in this study, a model for the hypothetical play of sequential interaction of NIMIN proteins with NPR1 in course of SAR is presented.
Der Einfluss des Stammzellmarkers ALDH und des EGFR-PI3 Kinase-Akt Signalwegs auf die Strahlenresistenz humaner Tumorzelllinien
(2014) Mihatsch, Julia; Rodemann, H.-Peter
Cancer is the second leading cause of death in industriated nations. Besides surgury and chemotherapy, radiotherapy (RT) is an important approch by which about 60% of patients are treated. The response of these patients to RT is very heterogenous. On the one hand, there are patients with tumors which are radiosensitive and can be cured, but on the other hand patients bear tumors which are quite resistant to radiotherapy. A Radioresistant phenotype of tumor cells causes treatment failure consequently leading to a limited response to radiotherapy. It is proposed, that radiotherapy outcome mainly depends on the potential of radiation on controlling growth, proliferation and survival of a specific population of tumor cells called cancer stem cells (CSCs) or tumor-initiating cells. Based on experimental studies so far reported it is assumed that the population of CSC varies in tumors from different entities and is relatively low compared to the tumor bulk cells in general. According to the CSC hypothesis, it might be concluded that the differential response of tumors to radiotherapy depends on CSC populations, since these supposedly slow replicating cells are able to initiate a tumor, to self renew indefinitely and to generate the differentiated progeny of a tumor. Besides the role of cancer stem cells in radiotherapy response, ionizing radiation (IR) activates the epidermal growth factor receptor (EGFR) and its downstream signaling pathways such as phosphoinositide 3-kinase (PI3K)/Akt, mitogen-activated protein kinase (MAPK) and Janus kinase/Signal Transducer and Activator of Transcription (JAK/STAT) pathways. Among these pathwas, PI3K/Akt is one of the most important pathways involved in post-irradiation survival: Activation of Akt results in activation of DNA-dependent protein kinase, catalytic subunit (DNA-PKcs). DNA-PKcs is a core enzyme involved in repair of IR-induced DNA-double strand breaks (DNA-DSB) through non-homologous end joining (NHEJ). The aim of the present study was to investigate the role of CSCs in resistance of radioselected subclones of non-small cell lung cancer (NSCLC) and breast cancer cells to irradiation. Additionally, the role of EGFR dependent PI3K/Akt/DNA-PKcs signaling in the context of CSC-mediated radiotherapy resistance was investigated. The following major results were obtained: 1) Radioresistant tumor cells from NSCLC-A549 cells as well as SK-BR-3 breast cancer cells could be isolated in vitro by a radioselection process. 2) In line with the proposed CSC biological behaviors radioselected cells presented extended population doubling time and decreased plating efficiency. 3) Among identified potential CSC markers such as CD133, Oct-4, Sox2 or aldehyde dehydrogenase (ALDH) expression, solely expression of the embryonic stem cell marker Oct-4 was increased in the radio-selected SK-BR-3 cells. However, increased ALDH activity but not enhanced ALDH protein expression was associated with radioresis-tance of A549 cells. 4) Respectively, ALDH activity was found to be involved in radio-resistance partially through PI3K pathway. 5) Using an siRNA approach, a differential effect of ALDH1 vs ALDH2 in terms of post-irradiation survival of tumor cells was demonstrated. In this context and in contrast to the role of ALDH2 a prosurvival effect of ALDH1 could be observed. 6) Radioresistance of IR-selected tumor cells was partially mediated through EGFR/PI3K/DNA-PKcs-dependent accelerated repair of DNA-DSBs. Thus, based on the described major findings in this study it is proposed that targeting of PI3K/Akt pathway and ALDH1 might be effective approaches towards overcoming CSC-mediated radiotherapy resistance.
Emerging principles of primary cilia dynamics in controlling tissue organization and function
(2023) Gopalakrishnan, Jay; Feistel, Kerstin; Friedrich, Benjamin M; Grapin‐Botton, Anne; Jurisch‐Yaksi, Nathalie; Mass, Elvira; Mick, David U; Müller, Roman‐Ulrich; May‐Simera, Helen; Schermer, Bernhard; Schmidts, Miriam; Walentek, Peter; Wachten, Dagmar
Primary cilia project from the surface of most vertebrate cells and are key in sensing extracellular signals and locally transducing this information into a cellular response. Recent findings show that primary cilia are not merely static organelles with a distinct lipid and protein composition. Instead, the function of primary cilia relies on the dynamic composition of molecules within the cilium, the context‐dependent sensing and processing of extracellular stimuli, and cycles of assembly and disassembly in a cell‐ and tissue‐specific manner. Thereby, primary cilia dynamically integrate different cellular inputs and control cell fate and function during tissue development. Here, we review the recently emerging concept of primary cilia dynamics in tissue development, organization, remodeling, and function.
Energy conservation in anaerobic Prevotella bryantii and Prevotella bivia : the role of membrane bound electron transfer complexes
(2022) Schleicher, Lena; Fritz-Steuber, Julia
Members of the family Prevotellaceae are Gram-negative, obligate anaerobic bacteria found in animal and human microbiomes, where they participate in the degradation of carbohydrates and peptides. Some Prevotella species are also opportunistic pathogens. In this study, growth requirements and central catabolic reactions of two different Prevotella strains were characterized. First, the energy conservation by Prevotella bryantii was analyzed. P. bryantii is a dominant species in the ruminal microbiome. It was demonstrated, that P. bryantii ferments glucose mainly to acetate and succinate. Furthermore, enzymatic and biochemical studies revealed that P. bryantii membranes harbor fully functional Na+ -translocating NADH:quinone oxidoreductase and quinol:fumarate reductase. It was shown, that electron transfer between these two enzymes occurs in native membranes. The enzymatic activities increased significantly by anoxic membrane preparations. Electron transfer in membrane vesicles was coupled to the build-up of a sodium motive force in P. bryantii. A respiratory chain composed of NQR and QFR in P. bryantii was proposed, which links succinate formation to NADH oxidation and SMF formation. Thus, P. bryantii does not rely solely on substrate-level phosphorylation for energy conservation, but gains additional energy utilizing the Na+-pump, NQR. This increases the overall yield of ATP per consumed glucose molecule. By gel electrophoresis and size exclusion chromatography, the existence of a supercomplex composed of NQR and QFR in P. bryantii membranes was demonstrated, which operates as sodium-translocating NADH:fumarate oxidoreductase. The understanding of the catabolic reactions in the rumen by the ruminal microbiota is important for the optimal nutrition of the ruminant. Our results indicate that P. bryantii plays an important role in the ruminal microbiota. P. bryantii extrudes mainly acetate and succinate as fermentative end-products into the rumen. The latter can be used by other organisms of the ruminal microbiome to metabolize propionate, which is an important nutrient for the ruminant since it enters the pathway of gluconeogenesis, yielding glucose. Prevotella bivia is considered to act as causative agent of human bacterial vaginosis. Growth of P. bivia on glucose was dependent on CO2 and resulted in the production of succinate, malate and acetate. With the help of optical spectroscopy and enzymatic measurements, the presence and activity of NQR and QFR in P. bivia were demonstrated. Electron transfer in membrane vesicles of P. bivia resulted in the build-up of a SMF. Similar to P. bryantii, P. bivia operates NQR and QFR for energy conservation in its membrane, resulting in succinate formation and SMF generation. P. bivia also exhibits high L-asparaginase and aspartate ammonia lyase activities in vitro, catalyzing the conversion of L-asparagine to fumarate and NH4+. These results were confirmed in vivo by growth experiments. Additional L-asparagine in the growth medium led to an elevated production of NH4+ and succinate from fumarate obtained during degradation of L-asparagine. At the same time an inhibitory effect of NH4+ on growth of P. bivia was observed. It is proposed, that amino acid degradation by P. bivia in microbial consortia associated with BV depends on the consumption of ammonium by Gardnerella vaginalis, another typical pathogen found in BV. At the same time, G. vaginalis could provide L-asparagine to P. bivia, strengthening their symbiotic relationship and triggering BV
Entstehung und Morphogenese des Vorderhirns - Die Rolle des mit Mikrotubuli assoziierten Proteins Hmmr in Xenopus laevis
(2020) Nickel, Angela; Feistel, Kerstin
The anlage of the central nervous system is formed during early embryonic development. The neuroectoderm establishes the neural plate which folds up to form the neural tube, a process that requires extensive cell rearrangements. During further embryogenesis the anterior part of the neural tube develops into the brain while the posterior part forms the spinal cord. Disturbances during neural tube closure (NTC) lead to severe developmental aberrations. Occurrence of specific neural tube defects indicates a distinct regulation of NTC along the anterior-posterior axis. For example, the severe malformation craniorachischisis is characterized by a failure to close the neural tube from hindbrain levels onwards, while the forebrain region develops normally. This distinct regulation presents itself in the wildtype in a delay between cranial and caudal NTC. While the mechanisms leading to posterior NTC are quite well understood, the morphological processes at the future forebrain level are largely unknown. The aim of this dissertation was to identify cell and tissue morphogenetic processes which are required for the formation and development of the anterior neural tube. As the underlying changes in cell shape as well as cell migration depend on the regulation of the cytoskeleton, the role of the microtubule-associated protein Hmmr was analyzed in the model organism Xenopus laevis. HMMR is a breast cancer susceptibility gene with described roles mainly in the tumor context, regulating cell motility and maintenance of mitotic spindle integrity. In Xenopus, gain as well as loss of function of hmmr delayed NTC and led to defects during further forebrain development. Loss of hmmr impaired separation of telencephalic hemispheres, resembling the human malformation “middle interhemispheric variant of holoprosencephaly”. Failure of ventricle separation could be traced back to disturbed roof plate formation. This was due to impaired NTC resulting from a lack of neural cell convergence. Tissue convergence at the forebrain level is mediated by radial intercalation (RI). During the required regulation of cell polarization and elongation via the microtubule cytoskeleton, hmmr cooperated with the core component of the planar cell polarity (PCP) pathway vangl2, which had been solely characterized as a factor for posterior NTC so far. In addition, experiments with hmmr deletion constructs missing functional domains at the amino- and/or carboxyl-terminus, revealed that elongation and intercalation are distinct processes which are regulated differentially via specific domains of Hmmr. RI required direct binding of Hmmr to microtubules, suggesting that Hmmr influences intercalation movements by regulating dynamic instability of microtubules. RI is essential for mesenchymal to epithelial transition (MET), a physiological morpho- genetic process, which is also involved in establishing tumor metastases in a pathological context. MET is regulated by concerted interaction of canonical Wnt / beta-Catenin and non- canonical Wnt / PCP signaling. Further tissue-specific loss of function experiments uncovered a general role for hmmr in Wnt-modulated RI / MET processes during gastrulation as well as during pronephros and tailbud development in Xenopus. The results suggest that Hmmr regulates microtubule dynamics. Since canonical as well as non-canonical Wnt signaling have been associated with microtubules, hmmr could act as a molecular switch to regulate the activity and interplay of two signaling pathways. This thesis thus identified a new physiological role for the microtubule-binding protein Hmmr, which up to now had been mainly studied in the cancer context. It was shown that Hmmr-mediated RI is a major driving force for anterior NTC. In addition, Hmmr was identified as an essential regulator of microtubule-dependent Wnt signaling in MET processes.

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