Fakultät Naturwissenschaften

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Biologie, Ernährungs-wissenschaften und Lebensmittelwissenschaften sind die Schwerpunkte der Fakultät. Die Forschung befasst sich mit Schlüsselthemen der Life Sciences.

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Analysis of secondary inorganic aerosols over the greater Athens area using the EPISODE–CityChem source dispersion and photochemistry model
(2024) Myriokefalitakis, Stelios; Karl, Matthias; Weiss, Kim A.; Karagiannis, Dimitris; Athanasopoulou, Eleni; Kakouri, Anastasia; Bougiatioti, Aikaterini; Liakakou, Eleni; Stavroulas, Iasonas; Papangelis, Georgios; Grivas, Georgios; Paraskevopoulou, Despina; Speyer, Orestis; Mihalopoulos, Nikolaos; Gerasopoulos, Evangelos
Secondary inorganic aerosols (SIAs) are major components of fine particulate matter (PM 2.5), having substantial implications for climate and air quality in an urban environment. In this study, a state-of-the-art thermodynamic model has been coupled to the source dispersion and photochemistry city-scale chemistry transport model EPISODE–CityChem, which is able to simulate pollutants at a horizontal resolution of 100m×100m, to determine the equilibrium between the inorganic gas and aerosol phases over the greater Athens area, Greece, for the year 2019. In agreement with in situ observations, sulfate ( SO42-) is calculated to have the highest annual mean surface concentration (2.15  ± 0.88  µgm-3) among SIAs in the model domain, followed by ammonium ( NH4+; 0.58  ± 0.14  µgm-3) and fine nitrate ( NO3-; 0.24  ± 0.22  µgm-3). Simulations denote that NO3-formation strongly depends on the local nitrogen oxide emissions, along with the ambient temperature, the relative humidity, and the photochemical activity. Additionally, we show that anthropogenic combustion sources may have an important impact on the NO3-formation in an urban area. During the cold period, the combined effect of decreased temperature in the presence of non-sea-salt potassium favors the partitioning of HNO3in the aerosol phase in the model, raising the NO3-formation in the area. Overall, this work highlights the significance of atmospheric composition and the local meteorological conditions for the equilibrium distribution of nitrogen-containing semi-volatile compounds and the acidity of inorganic aerosols, especially in urban areas where atmospheric trace elements from natural and anthropogenic sources coexist.
Competitive hierarchies in bryozoan assemblages mitigate network instability by keeping short and long feedback loops weak
(2023) Koch, Franziska; Neutel, Anje-Margriet; Barnes, David K. A.; Tielbӧrger, Katja; Zarfl, Christiane; Allhoff, Korinna T.
Competitive hierarchies in diverse ecological communities have long been thought to lead to instability and prevent coexistence. However, system stability has never been tested, and the relation between hierarchy and instability has never been explained in complex competition networks parameterised with data from direct observation. Here we test model stability of 30 multispecies bryozoan assemblages, using estimates of energy loss from observed interference competition to parameterise both the inter- and intraspecific interactions in the competition networks. We find that all competition networks are unstable. However, instability is mitigated considerably by asymmetries in the energy loss rates brought about by hierarchies of strong and weak competitors. This asymmetric organisation results in asymmetries in the interaction strengths, which reduces instability by keeping the weight of short (positive) and longer (positive and negative) feedback loops low. Our results support the idea that interference competition leads to instability and exclusion but demonstrate that this is not because of, but despite, competitive hierarchy.
Decoding the geography of natural TBEV microfoci in German: a geostatistical approach based on land-use patterns and climatological conditions
(2022) Borde, Johannes P.; Glaser, Rüdiger; Braun, Klaus; Riach, Nils; Hologa, Rafael; Kaier, Klaus; Chitimia-Dobler, Lidia; Dobler, Gerhard
Background: Tickborne-encephalitis (TBE) is a potentially life-threating neurological disease that is mainly transmitted by ticks. The goal of the present study is to analyze the potential uniform environmental patterns of the identified TBEV microfoci in Germany. The results are used to calculate probabilities for the present distribution of TBEV microfoci in Germany based on a geostatistical model. Methods: We aim to consider the specification of environmental characteristics of locations of TBEV microfoci detected in Germany using open access epidemiological, geographical and climatological data sources. We use a two-step geostatistical approach, where in a first step, the characteristics of a broad set of environmental variables between the 56 TBEV microfoci and a control or comparator set of 3575 sampling points covering Germany are compared using Fisher’s Exact Test. In the second step, we select the most important variables, which are then used in a MaxEnt distribution model to calculate a high resolution (400 × 400 m) probability map for the presence of TBEV covering the entire area of Germany. Results: The findings from the MaxEnt prediction model indicate that multi annual actual evapotranspiration (27.0%) and multi annual hot days (22.5%) have the highest contribution to our model. These two variables are followed by four additional variables with a lower, but still important, explanatory influence: Land cover classes (19.6%), multi annual minimum air temperature (14.9%), multi annual sunshine duration (9.0%), and distance to coniferous and mixed forest border (7.0%). Conclusions: Our findings are based on defined TBEV microfoci with known histories of infection and the repeated confirmation of the virus in the last years, resulting in an in-depth high-resolution model/map of TBEV microfoci in Germany. Multi annual actual evapotranspiration (27%) and multi annual hot days (22.5%) have the most explanatory power in our model. The results may be used to tailor specific regional preventive measures and investigations.
Editorial: Microbial biosurfactants: updates on their biosynthesis, production and applications
(2024) Hausmann, Rudolf; Déziel, Eric; Soberón-Chávez, Gloria
Experimental investigation of CO2 uptake in CO2 hydrates formation with amino acids as kinetic promoters and its dissociation at high temperature
(2022) Srivastava, Shubhangi; Kollemparembil, Ann Mary; Zettel, Viktoria; Claßen, Timo; Gatternig, Bernhard; Delgado, Antonio; Hitzmann, Bernd
The dissociation of CO2 gas hydrates (GH) with amino acid kinetic promoters and without promoters was studied at a high temperature of 90 °C for a period of 20 min to understand the percentage of CO2 gas and to select the best promoter that aids CO2 gas entrapment along with stability at a high temperature. The possibility of using four hydrophobic food grade amino acids, namely cysteine, valine, leucine, and methionine, and one surfactant, lecithin, as kinetic promoters for CO2 GH has been studied. The amino acids were added 0.5 g (wt%), and lecithin was added 5 g for the GH production. Furthermore, the amino acids leucine and methionine gave some positive results, therefore, these amino acids were carried further for the experimentation purpose in the production of CO2 GH. Also, a combinational use of these amino acids was studied to investigate the effect on % CO2 retention in comparison to the normal GH. From the results, it was observed that the stability of GH decreases with an increase in temperature, but the addition of promoters, especially leucine + methionine + lecithin increased the CO2 uptake during GH formation.
Fed-batch bioreactor cultivation of Bacillus subtilis using vegetable juice as an alternative carbon source for lipopeptides production: a shift towards a circular bioeconomy
(2024) Gugel, Irene; Vahidinasab, Maliheh; Benatto Perino, Elvio Henrique; Hiller, Eric; Marchetti, Filippo; Costa, Stefania; Pfannstiel, Jens; Konnerth, Philipp; Vertuani, Silvia; Manfredini, Stefano; Hausmann, Rudolf; Gudiña, Eduardo
In a scenario of increasing alarm about food waste due to rapid urbanization, population growth and lifestyle changes, this study aims to explore the valorization of waste from the retail sector as potential substrates for the biotechnological production of biosurfactants. With a perspective of increasingly contributing to the realization of the circular bioeconomy, a vegetable juice, derived from unsold fruits and vegetables, as a carbon source was used to produce lipopeptides such as surfactin and fengycin. The results from the shake flask cultivations revealed that different concentrations of vegetable juice could effectively serve as carbon sources and that the fed-batch bioreactor cultivation strategy allowed the yields of lipopeptides to be significantly increased. In particular, the product/substrate yield of 0.09 g/g for surfactin and 0.85 mg/g for fengycin was obtained with maximum concentrations of 2.77 g/L and 27.53 mg/L after 16 h, respectively. To conclude, this study provides the successful fed-batch cultivation of B. subtilis using waste product as the carbon source to produce secondary metabolites. Therefore, the consumption of agricultural product wastes might be a promising source for producing valuable metabolites which have promising application potential to be used in several fields of biological controls of fungal diseases.
Integrative description of Temnothorax siculus sp. n.: a new ant species from Sicily, Italy (Hymenoptera, Formicidae)
(2025) Schifani, Enrico; Alicata, Antonio; Prebus, Matthew M.; Csősz, Sándor; Fernández, Fernando; Guerrero, Roberto José
The mostly Holarctic genus Temnothorax (Hymenoptera, Formicidae) is the most diverse ant genus in temperate regions. The Mediterranean, a biodiversity hotspot of rare ant species, hosts over 150 Temnothorax taxa, including several short-range endemics. Over the last few years, phylogenomic reconstructions and integrative taxonomy have significantly improved the understanding of global Temnothorax diversity, but much taxonomic work is still needed in the Mediterranean region. Here, we present the integrative description of a new species of the genus, discovered in the central Mediterranean island of Sicily: Temnothorax siculus sp. n. is defined and compared to congeneric species integrating morphometrics and phylogenomics. It is a ground-nesting, lowland species, of which workers were regularly observed foraging on bushes and small trees. In the global phylogeny, covering all the main lineages of the region, it belongs to the Palearctic clade and is related to the tuberum and unifasciatus complexes. Morphological separation from other Sicilian Temnothorax species can generally be achieved on qualitative characters, but we also provide morphometric discriminant functions to separate it from T. apenninicus and especially T. unifasciatus . Temnothorax siculus has been rarely collected but appears to be widespread in Sicily, and may occur in neighboring regions.
Das Land‐Atmosphäre‐System der Erde: die „Erdung“ von Wetter‐ und Klimaprozessen
(2025) Wulfmeyer, Volker; Jach, Lisa; Branch, Oliver; Breil, Marcus
Das System Land-Atmosphäre umfasst den Boden, die Landbedeckung und die untere Troposphäre. Die komplexen Prozesse in diesem System sind gekoppelt über den Austausch von Impuls, Energie und Masse. Unter anderem spielt der Pflanzenbewuchs eine zentrale Rolle. Daher ist ein tiefgreifendes Verständnis dieses Systems fundamental für die Genauigkeit von Wettervorhersagen, mittelfristige bis subsaisonale Vorhersagen und Klimaprognosen. Dazu gehört auch die Vorhersage von Extremereignissen wie Dürren.
Macroscopic rheology of non-Brownian suspensions at high shear rates: the influence of solid volume fraction and non-Newtonian behaviour of the liquid phase
(2021) Wilms, Patrick; Hinrichs, Jörg; Kohlus, Reinhard
Modelling the macroscopic rheology of non-Brownian suspensions is complicated by the non-linear behaviour that originates from the interaction between solid particles and the liquid phase. In this contribution, a model is presented that describes suspension rheology as a function of solid volume fraction and shear rate dependency of both the liquid phase, as well as the suspension as a whole. It is experimentally validated using rotational rheometry ( ≤ 0.40) and capillary rheometry (0.55 ≤ ≤ 0.60) at shear rates > 50 s−1. A modified Krieger-Dougherty relation was used to describe the influence of solid volume fraction on the consistency coefficient, , and was fitted to suspensions with a shear thinning liquid phase, i.e. having a flow index, , of 0.50. With the calculated fit parameters, it was possible to predict the consistency coefficients of suspensions with a large variation in the shear rate dependency of the liquid phase ( = 0.20–1.00). With increasing solid volume fraction, the flow indices of the suspensions were found to decrease for Newtonian and mildly shear thinning liquid phases ( ≥0.50), whereas they were found to increase for strongly shear thinning liquid phases ( ≤0.27). It is hypothesized that this is related to interparticle friction and the relative contribution of friction forces to the viscosity of the suspension. The proposed model is a step towards the prediction of the flow curves of concentrated suspensions with non-Newtonian liquid phases at high shear rates.
On the temperature stability requirements of free-running Nd:YAG lasers for atmospheric temperature profiling through the rotational Raman technique
(2024) Zenteno-Hernández, José Alex; Comerón, Adolfo; Dios, Federico; Rodríguez-Gómez, Alejandro; Muñoz-Porcar, Constantino; Sicard, Michaël; Franco, Noemi; Behrendt, Andreas; Di Girolamo, Paolo
We assess the temperature stability requirements of unseeded Nd:YAG lasers in lidar systems for atmospheric temperature profiling through the rotational Raman technique. Taking as a reference a system using a seeded laser assumed to emit pulses of negligible spectral width and free of wavelength drifts, we estimate first the effect of the pulse spectral widening of the unseeded laser on the output of the interference filters, and then we derive the limits of the allowable wavelength drift for a given bias in the temperature measurement that would add to the noise-induced uncertainty. Finally, using spectroscopic data, we relate the allowable wavelength drift to allowable temperature variations in the YAG rod. We find that, in order to keep the bias affecting atmospheric temperature measurements smaller than 1 K, the Nd:YAG rod temperature should also be kept within a variation range of 1 K.
Oral processing of anisotropic food structures: A modelling approach to dynamic mastication data
(2024) Oppen, Dominic; Weiss, Jochen
Materials that have been generated through a directionally oriented growth process often exhibit anisotropic properties. Plant materials such as tubers and roots or animal matter used to produce products such as steaks or pasta filata are characterized by an alignment of molecules, aggregates or cells in certain dimensions leading to differing properties depending on direction. Such an anisotropic property behavior is important for a wide range of quality attributes such as texture, appearance, stability and even aroma and taste. Especially the former is of critical importance to consumer liking and acceptance of foods. Structure-texture relationships have already been established for certain foods. For anisotropic foods though, a determination of such relationships is difficult, since the comminution of foods during chewing causes complex changes to the underlying anisotropic structure elements that are not easily measurable using conventional mechanical texture analysis tests such as cutting, shearing or compression. On the other hand, sensory tests using panels are very time consuming and often do not reveal structural causes for texture like or dislike by consumers. The lack of availability of suitable analytical techniques that allow for a description of texture properties relevant to mastication hampers especially the development of meat substitutes that are currently trending. The aim of this work was therefore to characterize changes to anisotropic structures induced by chewing (henceforth referred to as "oral processing") using a novel measurement approach that records kinematic and electromyographic properties of the chewing process. The kinematics of jaw movement were recorded using a 3D motion tracking system. Muscle activity was recorded using an electromyograph. From the measured data, characteristics for individual chews were calculated, which were represented in a linear mixed model as a function of the food structure. Section I provides the scientific basis for this work through a preface and a literature review. Grown and manufactured anisotropic foods are identified and described. A general overview of the production, phase phenomena and characterization methods for anisotropic food materials is given. Section II contains the oral processing experiments. In Chapter III, the focus was put on the impact of fiber length of grown structures on mastication behavior. Meat model systems with different microstructures but the same composition were produced. The model systems with anisotropic and isotropic microstructures were comminuted to different sizes, and the fiber length was inferred from the length of the particles, taking into account the particle size effect of chewing. The results indicate that longer fibers cause greater jaw movement and muscle activity. For instance, estimate peak muscle activity of anisotropic samples is 58.2857 µV higher (p=0.0156) compared to isotropic samples. Chapter IV describes minced meat products in which certain phase volumes were replaced by a finely comminuted meat mass. The aim of the study was to find detection limits beyond which an increase or decrease in muscle fiber cells does not lead to a further adjustment of the mastication properties. In the study, a transition point was identified at around 50 % of batter-like substances. Food models with more than 50 % of batter-like substance showed a smaller change in mastication parameters. The effect was more pronounced with higher proportions of fibrous material. Chapter V dealt with the topic of meat substitutes. A simple model of meat substitutes was used to test whether the effects found in anisotropic animal-based products can also be found in plant-based products. Hydrocolloid gels with different phase volumes of wet textured plant protein were produced. Similar effects for the animal-based products were observed, although the correlation was not as strong. It was hypothesized that a large part of the effect was due to the weak binding ability of hydrocolloid gels. Thus, the anisotropic particles could not be held together with a low proportion of the outer hydrocolloid gel and required less muscle activity despite a higher content of structured phase. Section III assessed alternative data evaluation strategies to the linear mixed model. The aim of the study in Chapter VI was to anticipate the model products from Chapter III using a classification approach. Algorithms of three categories were trained with the data set of the chewing processes. Two approaches were used to evaluate whether the algorithms could either resolve each individual food model with variations in microstructure (anisotropy) and macrostructure (particle size) or in microstructure only. For both approaches, the algorithms performed significantly better compared to a random guessing. The best classification results were achieved by the boosted ensemble learner "XGBoost", which assigned 96.617 % of all bites to the corresponding food microstructure. Furthermore, it was demonstrated that standardized and normalized oral processing data are almost not subject-dependent. In addition, feature importance analysis confirmed that lateral jaw movement is a good indicator of the presence of anisotropic food material and, with a weight of 0.39205, is the most important feature for classifying samples according to their structure. In summary, this work was able to show that the dynamic characteristics of mastication change depending on anisotropic properties. In general, modeling of mastication characteristics has never been conducted before and represents a promising advance over mean-based evaluation. The machine learning approach is also new in the field of oral processing and proved to be promising. For future research, it is proposed to correlate the dynamic features with sensory texture data to obtain direct correlations between chewing characteristics and texture attributes.
Soil drought sets site specific limits to stem radial growth and sap flow of Douglas-fir across Germany
(2024) Niessner, Armin; Ehekircher, Stefan; Zimmermann, Reiner; Horna, Viviana; Reichle, Daniel; Land, Alexander; Spangenberg, Göran; Hein, Sebastian
Introduction: Soil drought during summer in Central Europe has become more frequent and severe over the last decades. European forests are suffering increasing damage, particularly Norway spruce. Douglas-fir ( Pseudotsuga menziesii (Mirbel) Franco), a non-native tree species, is considered as a promising alternative to build drought-resilient forests. The main goal of this study was to investigate the intraannual radial stem growth and sap flow performance of Douglas-fir along a precipitation gradient across Germany under severe drought. Material and methods: Sap flow and stem radial changes of up to ten trees each at four sites with different precipitation regimes were measured in combination with volumetric soil water content during the growing season of 2022. Measurements of stem radial changes were used to calculate the trees’ stem water deficit, a proxy for tree water status and drought stress. Results: The severe summer drought of 2022 led to an early growth cessation and a significant reduction in daily sap flow at all four sites monitored. We could identify a site-specific threshold in soil water availability ranging between 21.7 and 29.6% of relative extractable water (REW) under which stem water reserves cannot be replenished and thereby inhibiting radial growth. We could also demonstrate that at this threshold, sap flow is heavily reduced to between 43.5 and 53.3%, and for a REW below 50%, sap flow linearly decreases by 1.1–2.0% per 1% reduction in REW. This reduction tends to follow the humidity gradient, being more pronounced at the most oceanic characterized site and suggesting an adaptation to site conditions. Even though Douglas-fir is considered to be more drought stress resistant than Norway spruce, growth and sap flow are greatly reduced by severe summer drought, which became more frequent in recent years and their frequency and intensity is likely to increase. Conclusions: Our results suggest that timber production of Douglas-fir in Central Europe will decline considerably under projected climate change, and thus pointing to site specific growth constraints for a so far promising non-native tree species in Europe.
Structure elucidation and characterization of novel glycolipid biosurfactant produced by Rouxiella badensis DSM 100043T
(2025) Harahap, Andre Fahriz Perdana; Conrad, Jürgen; Wolf, Mario; Pfannstiel, Jens; Klaiber, Iris; Grether, Jakob; Hiller, Eric; Vahidinasab, Maliheh; Salminen, Hanna; Treinen, Chantal; Perino, Elvio Henrique Benatto; Hausmann, Rudolf; Serianni, Anthony S.
Microbial biosurfactants have become increasingly attractive as promising ingredients for environmentally friendly products. The reasons for this are their generally good performance and biodegradability, low toxicity, production from renewable raw materials, and benefits for the environment perceived by consumers. In this study, we investigated the chemical structure and properties of a novel glycolipid from a new biosurfactant-producing strain, Rouxiella badensis DSM 100043 T . Bioreactor cultivation was performed at 30 °C and pH 7.0 for 28 h using 15 g/L glycerol as a carbon source. The glycolipid was successfully purified from the ethyl acetate extract of the supernatant using medium pressure liquid chromatography (MPLC). The structure of the glycolipid was determined by one- and two-dimensional ( 1 H and 13 C) nuclear magnetic resonance (NMR) and confirmed by liquid chromatography electrospray ionization mass spectrometry (LC-ESI/MS). NMR analysis revealed the hydrophilic moiety as a glucose molecule and the hydrophobic moieties as 3-hydroxy-5-dodecenoic acid and 3-hydroxydecanoic acid, which are linked with the glucose by ester bonds at the C2 and C3 positions. Surface tension measurement with tensiometry indicated that the glucose–lipid could reduce the surface tension of water from 72.05 mN/m to 24.59 mN/m at 25 °C with a very low critical micelle concentration (CMC) of 5.69 mg/L. Moreover, the glucose–lipid demonstrated very good stability in maintaining emulsification activity at pH 2–8, a temperature of up to 100 °C, and a NaCl concentration of up to 15%. These results show that R. badensis DSM 100043 T produced a novel glycolipid biosurfactant with excellent surface-active properties, making it promising for further research or industrial applications.
The ATMONSYS water vapor DIAL: advanced measurements of short-term variability in the planetary boundary layer
(2025) Speidel, Johannes; Vogelmann, Hannes; Behrendt, Andreas; Lange, Diego; Mauder, Matthias; Reichardt, Jens; Wolz, Kevin
High-resolution measurements of water vapor concentrations and their transport throughout the turbulent planetary boundary layer (PBL) and beyond are key for an enhanced understanding of atmospheric processes. This study presents data from the mobile Atmospheric Monitoring System (ATMONSYS) Differential Absorption Lidar (DIAL), operated with a novel titanium sapphire (Ti:Sa) laser concept, for the first time. The ATMONSYS DIAL aims to resolve turbulence throughout the PBL with a sampling frequency of 10 sand vertical resolutions of less than 200 m. General measuring capabilities during high-noon, clear-sky, summer conditions with a maximum vertical measurement range of >3 km and statistical uncertainties of <5 % are demonstrated. The analysis of turbulence spectra shows good agreement with Kolmogorov's law, demonstrating the system's capability to resolve turbulence. However, deviations from Kolmogorov behavior are observed at certain frequency ranges. By combining the ATMONSYS DIAL with an adjacent high-quality Doppler wind lidar, some of these deviations are mitigated in the co-spectra due to independent noise from both instruments. However, intermediate deviations from Kolmogorov behavior persist, likely due to surrounding surface heterogeneities. The agreement of the co-spectra with Kolmogorov's law at the highest frequencies demonstrates that the ATMONSYS DIAL is capable of resolving turbulent latent energy fluxes down to the measurement's Nyquist frequency of 5×10-2Hz. A system cross-intercomparison of the ATMONSYS DIAL with two adjacent water vapor Raman lidars and radiosondes shows overall good agreement between the sensors, despite minor DIAL deficiencies under certain conditions with broken clouds passing over the lidar. The observed profile-to-profile DIAL fluctuations and sensor-to-sensor deviations, in combination with low statistical uncertainty, highlight the advantage of humidity lidars, such as the ATMONSYS DIAL, in capturing both short-term and small-scale dynamics of the lowermost atmosphere.

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