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Can market fragmentation explain the limited success of political attempts to promote grain legume cultivation in Germany?
(2025) Mittag, Franziska; Hess, Sebastian
Grain legumes, such as field peas, field beans, sweet lupins and soybeans, are known to increase biodiversity within the appropriate crop rotation and are an important source of import-substituting feed protein. National and regional policy schemes have long tried to support the cultivation of grain legumes. Although many regions in Germany offer favourable conditions for grain legumes, previous subsidy schemes have failed to increase the area under cultivation and farmers report a lack of market incentives. Indeed, the available price data exhibit a substantial share of non-random missing values in weeks when grain legumes were not traded. We analyse these non-price periods using cointegration tests and single-hurdle Tobit models. The results indicate that regional price formation for grain legumes in German regions depends not only on a minimum quantity of the respective legume crop in supply but also on a favourable supra-regional soybean price: Regional grain legume markets are not integrated and show evidence of a fragmented market structure. This may explain why local grain legume value chains have failed to emerge in Germany, despite decades of policy attempts to support these crops.
The chicken gut microbiome in conventional and alternative production systems
(2025) Cheng, Yu-Chieh; Krieger, Margret; Korves, Anna-Maria; Camarinha‑Silva, Amélia
The poultry gut microbiome plays a key role in nutrient digestion, immune function, and overall health. Differences among various farming systems, including conventional, antibiotic-free, free-range, and organic systems, influence microbial composition and function through variations in diet, genetic selection, environmental exposure, and antibiotic use. Conventional systems typically rely on formulated diets and controlled housing conditions, often with routine antimicrobial use. In contrast, organic systems emphasize natural feed ingredients, including roughage, outdoor access, and strict limitations on the use of antibiotics. These divergent practices shape the gut microbiota differently, with organic systems generally associated with greater exposure to environmental microbes and, consequently, greater microbial diversity. However, the implications of this increased diversity for poultry health and performance are complex, as organic systems may also carry a higher risk of pathogen exposure. This review summarizes current findings on the chicken gut microbiome across conventional and alternative production systems (antibiotic-free, free-range, and organic), focusing on microbial diversity, functional potential, and disease resilience. The need for standardized methodologies and consistent nomenclature in microbiome research is also discussed to improve comparability across studies. Understanding how production systems influence the gut microbiota is essential for improving poultry health and productivity while addressing challenges related to antimicrobial resistance and sustainable farming practices.
Coffee berry borer control, but not coffee yield, is mediated by non-additive interaction between birds and ants across different cultivation systems
(2026) Cardona Tejada, Damaris A.; Parra, Juan L.; Grass, Ingo; Schurr, Frank M.
Coffee is one of the most traded tropical crops, cultivated in some of the most biodiverse regions on the planet. Coffee production can be seriously reduced by the coffee berry borer (CBB), a specialized beetle that feeds on the endosperm of coffee berries. Given the CBB's economic relevance, coffee-producing countries have developed extensive Integrated Pest Management programs. Nonetheless, most of these programs fail to incorporate CBB control by natural enemies such as birds and ants. While the effects of birds and ants on CBB suppression have been demonstrated to be positive when studied in isolation, their interactive effects have been little studied. To better understand the effects of the trophic interaction between birds and ants on CBB control, we conducted a full-factorial block experiment excluding birds and ants from coffee shrubs. We distributed 49 experimental blocks across three different coffee systems in a Colombian landscape: sun-exposed coffee, coffee-plantain intercropping, and shade coffee. We found birds to be key control agents of CBB: in the presence of ants, bird exclusion increased CBB infestation by 36 %. However, in the absence of ants, birds had little effect on CBB infestation, demonstrating that the effects of birds and ants were non-additive. This suggests that birds control CBB through a trophic cascade mediated by ants. We also found that the effects of exclusions were modified by the cultivation system, with the shade coffee system consistently reducing CBB infestation. Our experiment demonstrates that crop diversification is an effective measure for integrating local enemies into IPM strategies. Nonetheless, we acknowledge that trophic interactions are highly complex and exhibit a context-dependency that can result in the suppression of biological pest control. Therefore, we recommend conducting future analysis on evaluating the effects of predator´s community composition to encourage the development of IPM programs that leverage biodiversity in agroecosystems.
Comparing hops and malt price transmission in the beer value chain: evidence from Germany
(2025) Hess, Sebastian; Bublik, Nikolas
The German beer value chain has received limited attention so far, despite the country’s central role in global beer production. This study investigates the price dynamics of its two key inputs—hops and malt—using monthly price data from 2015 to 2024 based on a unique dataset from a German hops cooperative. While contract farming is common for both raw materials, malt is traded via private firms, whereas hops are marketed almost exclusively through farmer-owned cooperatives. A vector error correction model (VECM) is estimated, incorporating structural break dummies identified through Bai–Perron tests, followed by forecast error variance decomposition (FEVD) and impulse response function (IRF) analysis. The results show that hop prices are largely self-driven and adjust more quickly to deviations from equilibrium than malt or beer prices. While malt and beer exhibit stronger interdependencies, the hop sector displays greater price stability. The findings further reveal that the malting sector responded significantly to the recent energy price crisis in Germany, whereas the hop sector did not.
A diamine oxidase from Glutamicibacter halophytocola for the degradation of histamine and tyramine in foods
(2025) Kettner, Lucas; Freund, Alexander; Bechtel, Anna; Costa-Catala, Judit; Fischer, Lutz
A novel diamine oxidase (DAO) was discovered in the bacterium Glutamicibacter halophytocola (DAO-GH). The gene of DAO-GH was integrated into the genome of the yeast Komagataella phaffii and recombinantly produced under control of the methanol-inducible AOX1 promoter in a bioreactor cultivation. A high DAO activity of 70.2 ± 5.2 µkat/Lculture (5.25 ± 0.22 µkat/gprotein) was yielded after 90 h of cultivation. The DAO-GH was partially purified by the polyethyleneimine precipitation of nucleic acids, fractionated ammonium sulfate precipitation and hydrophobic interaction chromatography, resulting in a specific DAO activity of 19.7 µkat/gProtein. The DAO-GH was then biochemically investigated regarding its potential for histamine and tyramine degradation in fermented foods and the human small intestine. Interestingly, the DAO-GH showed activity even at a low pH of 5 and low temperature of 6 °C. Both histamine and tyramine were effectively degraded and DAO-GH showed especially very high affinity towards tyramine (Km of 0.009 mM). The DAO-GH was shown to be capable of degrading around 20% of the initially applied histamine in tuna paste (pH 5.6) at 5 °C within 24 h and completely degraded the histamine in a simulated intestinal fluid within 1.5 h in bioconversion experiments. The DAO-GH was spray-dried for the production of a storable enzyme preparation. Only around 17% of activity were lost in this process and the DAO-GH remained stable at room temperature for at least 3 months. The discovery of this DAO with its very advantageous biochemical properties allows the preparation of histamine-reduced or -free fermented foods by a simple enzymatic treatment or the treatment of histamine intolerance symptoms as a dietary supplement or medicine.
Effects of dietary phosphorus and myo-inositol supplementation on NaPi-IIb and TRPV6 protein expression in duodenal apical membranes of laying hens from two strains
(2026) Shomina, Nataliia; Sommerfeld, Vera; Hanauska, Anna; Oster, Michael; Rodehutscord, Markus; Huber, Korinna
Phosphorus (P) and calcium (Ca) absorption in the intestine is mediated by apical brush border membrane (BBM) transporters, including the sodium-dependent phosphate (Pi) transporter NaPi-IIb and the Ca²⁺-selective channel TRPV6. Both are highly expressed in the duodenum and exhibit dietary adaptability; yet little is known about how this adaptability varies with strain and age in laying hens. The present study examined the effects of dietary mineral P renunciation and myo-inositol (MI) supplementation on NaPi-IIb and TRPV6 protein expression in the duodenal BBM of Lohmann Brown-Classic (LB) and Lohmann LSL-Classic (LSL) hens. Two independent feeding trials were conducted: hens received diets either with or without mineral P supplementation (wk 15 - 19 and 20 – 24), or with graded MI levels (0 - 3 g/kg; wk 26 – 30). At the end of each period, hens were euthanized and protein expression of NaPi-IIb and TRPV6 in duodenal BBM was studied by western blotting. Statistical correlation with additional traits of mineral metabolism was analyzed. An immunoreactive NaPi-IIb band was detected at ∼ 45 kDa; therefore, all results reported here refer to this NaPi-IIb fragment. Mineral P renunciation did not affect NaPi-IIb fragment or TRPV6 expression in either hen strain. In LSL hens NaPi-IIb fragment expression increased from wk 19 to wk 24, whereas in LB hens it remained unchanged. NaPi-IIb fragment expression was positively associated with duodenal phosphatase activity and plasma estradiol. TRPV6 expression tended to reduce in LB hens from wk 19 to wk 24, but remained stable in LSL hens. TRPV6 expression was positively associated with duodeno-jejunal P content. MI supplementation upregulated NaPi-IIb fragment expression in LB, but downregulated it in LSL hens with high dietary MI levels, without affecting TRPV6. These findings demonstrate strain-dependent regulatory patterns of duodenal expression of NaPi-IIb fragment and TRPV6 in response to physiological stage and MI supply, indicating that mineral feeding strategies may benefit from genotype-specific consideration, whereas the mechanisms underlying MI-related effects require further clarification.
Effects of Prosopis juliflora pods on sheep performance and carcass traits, and their methane mitigation potential as assessed in vitro
(2025) Tadesse, Assefa; Titze, Natascha; Rodehutscord, Markus; Melesse, Aberra
This study aimed to assess the effect of partial substitution of concentrate mix (CM) with Prosopis juliflora pod (PJP) on growth performance and carcass traits in sheep, and its potential to reduce methane (CH4) production in vitro. A total of 25 yearling rams with an initial body weight of 15.8±1.53 kg was randomly assigned to five treatment diets. The diets were a control diet (JP0) and JP0 replaced with PJP at the level of 5% (JP5), 10% (JP10), 15% (JP15), and 20% (JP20). Data were collected on feed intake, body weight, and carcass characteristics. Methane production was determined from 24 h in vitro gas production. The substitution of CM with PJP did not affect feed intake, body weight, weight gain, feed efficiency, and carcass traits (p>0.05). The in vitro CH4 production was reduced (p<0.001) in diets containing increased levels of PJP. The metabolizable energy for JP10, JP15 and JP20 diets was 11.9, 11.6 and 11.5 MJ/kg DM, respectively (p>0.05). In conclusion, replacing CM with PJP did not negatively affect growth performance and carcass characteristics and could be used as potential supplement to mitigate methane emissions. Further in vivo studies involving respiration chambers are recommended to investigate the CH4 reduction potential of PJP.
Expression of fibroblast growth factor 23 (FGF23) and αKlotho in two commercial laying hen strains fed with and without dietary mineral P supplements before and after the onset of the laying phase
(2025) Meier, Leonie; Wallauch, Nadine; Feger, Martina; Oster, Michael; Sommerfeld, Vera; Schmucker, Sonja; Wimmers, Klaus; Huber, Korinna; Stefanski, Volker; Rodehutscord, Markus; Föller, Michael
Maintenance of phosphate homeostasis is particularly critical in laying hens for bone formation and calcium mobilization. The supplementation of their feed with mineral phosphate is common although recent research questions the usual levels of supplementation. Phosphate homeostasis is classically regulated by active vitamin D (calcitriol) and parathyroid hormone, whereas fibroblast growth factor 23 (FGF23) and its co-receptor αKlotho are novel factors. FGF23 has emerged as an important disease biomarker and αKlotho as an anti-aging factor in mammals, however, little is known about their role in poultry. Here, we studied FGF23 and αKlotho expression in two commercial laying hen strains under conditions of dietary mineral phosphorus renunciation and sufficient phosphorus supply. Fifteen- and 20-week-old Lohmann Brown-Classic (LB) or LSL-Classic (LSL) hens were fed a standard maize-soybean-based diet containing 0 or 1 g/kg additional mineral phosphorus for 4 weeks. The animals were sacrificed, and gene expression studied in different organs by quantitative real-time PCR and protein expression by western blotting. Statistical correlation with further parameters of mineral metabolism was analyzed by Pearson’s correlation coefficient or Spearman’s Rho. As a result, FGF23 bone expression was significantly lower and hepatic FGF23 expression higher in 24-week-old than in 19-week-old hens. Bone, hepatic, and renal αKlotho expression was significantly higher in older than younger animals. Compared to LB hens, LSL hens exhibited higher hepatic αKlotho irrespective of diet and age. Dietary phosphorus content did not significantly affect FGF23 and αKlotho expression. Bone FGF23 expression was positively and hepatic FGF23 negatively associated with plasma phosphate concentration whereas bone FGF23 expression was negatively and hepatic FGF23 positively associated with plasma calcitriol concentration. To conclude, we uncovered a strong impact of age and strain on FGF23 and αKlotho expression in two high performance laying hen strains, effects possibly associated with initiation of the egg-laying phase. Moreover, the regulation of hepatic FGF23 expression differed from the regulation of bone FGF23 expression. Further studies are needed to elucidate the physiological relevance.
Genomic landscape of high‐altitude adaptation in East African mountain honey bees (Apis mellifera)
(2025) Mazzoni, Marco; Loidolt, Florian; Kersten, Sonja; Amulen, Deborah Ruth; Vudriko, Patrick; Meyer, Philipp; Scharnhorst, Victor Sebastian; Scheiner, Ricarda; Hasselmann, Martin
Understanding the evolutionary processes leading to differentiation within species is a central goal in population biology. A key process is local adaptation, for which organisms evolve traits enhancing the survival and reproduction in specific environments. Honey bees ( Apis mellifera ) in East Africa are well adapted to highland environments, showing different phenotypes, including behavior, compared to lowland bees. Despite these differences, highland and lowland honey bees show very low genetic differentiation, with the exception of two segments on chromosome 7 (r7) and chromosome 9 (r9), which were previously identified as chromosomal inversions. These inversions are rare in lowland populations, suggesting a key role in adaptation to high‐elevation habitats. In this study, we obtained 24 whole genomes from honey bees of Western Uganda and compared these with existing data from Kenya. We show that the chromosomal inversions play a pivotal role in local adaptation in both regions but with substantial differentiation. Genome‐wide analysis of polymorphism revealed additional genomic regions potentially involved in high‐altitude adaptation. The acquisition of transcriptome data from highland and lowland honey bees in Uganda has enabled the first insights into the differential expression of genes between these bees. Our findings elucidate the involvement of genes in behavioral and oxygen consumption processes. This paves the way to clarify the interplay of r7 and r9 with gene expression and to unravel the regulatory network underlying A. mellifera adaptation to high‐elevation habitats. Our study will contribute to a better understanding of the evolutionary processes in honey bee populations driven by environmental conditions.
Historic insights and future potential in wheat elaborated using a diverse cultivars collection and extended phenotyping
(2025) El Hassouni, Khaoula; Afzal, Muhammad; Boeven, Philipp H. G.; Dornte, Jost; Koch, Michael; Pfeiffer, Nina; Pfleger, Franz; Rapp, Matthias; Schacht, Johannes; Spiller, Monika; Sielaff, Malte; Tenzer, Stefan; Thorwarth, Patrick; Longin, C. Friedrich H.
Wheat is one of the most important staple crops worldwide. Wheat breeding mainly focused on improving agronomy and techno-functionality for bread or pasta production, but nutrient content is becoming more important to fight malnutrition. We therefore investigated 282 bread wheat cultivars from seven decades of wheat breeding in Central Europe on 63 different traits related to agronomy, quality and nutrients in multiple field environments. Our results showed that wheat breeding has tremendously increased grain yield, resistance against diseases and lodging as well as baking quality across last decades. By contrast, mineral content slightly decreased without selection on it, probably due to its negative correlation with grain yield. The significant genetic variances determined for almost all traits show the potential for further improvement but significant negative correlations among grain yield and baking quality as well as grain yield and mineral content complicate their combined improvement. Thus, compromises in improvement of these traits are necessary to feed a growing global population.
Identifying governance challenges in scaling biofortification programs and the potential of training: a case study of Uganda
(2025) Alioma, Richard; Zeller, Manfred; Birner, Regina; Bosch, Christine; Muayahoto, Bho; Zeller, Manfred; Department of Rural Development Theory and Policy, Hohenheim University, Stuttgart, Germany; Birner, Regina; Department of Social and Institutional Change in Agricultural Development, Hohenheim University, Stuttgart, Germany; Bosch, Christine; Department of Social and Institutional Change in Agricultural Development, Hohenheim University, Stuttgart, Germany; Muayahoto, Bho; HarvestPlus, International Food Policy Research Institute, Washington, DC, United States
Introduction: Biofortification initiatives can significantly help reduce micronutrient deficiencies in developing countries. However, when hidden hunger affects a large segment of the population, large-scale implementation is necessary to achieve the desired results. We aimed to identify governance challenges in biofortification, and potential remedies based on a conceptual framework that considers low demand and the invisible nature of micronutrient traits in crops. Methods: Using process net maps and quantitative methods, this paper explores how farmer training can address governance issues. Results: Results show that, in addition to common agricultural marketing issues, sweet potato vine multipliers struggle with vine supply, value chain actors adulterate iron beans, and consumers are hesitant to pay higher prices for biofortified crops. These problems may result from information asymmetry, merit goods, collective action issues, and free riding. Furthermore, training had little impact on reducing the governance challenge arising from information asymmetry. Discussion/conclusion: One of the key solutions was investing in subsidies to increase production and raise awareness of the importance of nutritious foods. With governance problems, there is a need to take them into consideration when planning and expanding biofortification programs.
Iron partitioning and photosynthetic performance in Cannabis sativa L. reveal limitations of nanoscale zero-valent iron as a fertilizer
(2025) Büser, Christian; Hartung, Jens; Deurin, Lukas; Graeff-Hönninger, Simone
Iron (Fe) is the fourth most abundant element in the Earth’s crust but remains the third most limiting nutrient for crop productivity due to its low solubility in most soils. The emergence of nanotechnology has introduced nanoscale zero-valent iron (nZVI) as a potential Fe fertilizer with high surface reactivity and improved bioavailability. However, its comparative efficacy relative to conventional chelated Fe sources remains poorly understood. This study investigated Fe partitioning, photosynthetic efficiency, biomass accumulation, and cannabinoid synthesis in Cannabis sativa L. grown hydroponically under Fe-EDTA, nZVI, or Fe-deficient (-Fe) treatments. Total Fe concentrations were markedly reduced in -Fe plants compared with both Fe-EDTA and nZVI treatments. Despite similar root Fe contents between Fe-EDTA and nZVI, only Fe-EDTA facilitated efficient translocation to shoots, while nZVI-derived Fe predominantly accumulated in roots. Consequently, nZVI-treated plants exhibited intermediate photosynthetic performance and water-use efficiency—lower than Fe-EDTA but significantly higher than -Fe. Although Fe translocation differed substantially, inflorescence biomass and cannabinoid yield were comparable between nZVI and Fe-EDTA treatments, both exceeding those of -Fe plants. These results suggest that yield reductions under Fe deficiency arise not solely from Fe scarcity but also from the metabolic costs of Strategy I Fe acquisition, which are partially circumvented by root Fe availability from nZVI. Overall, Fe-EDTA demonstrated superior nutrient use efficiency, whereas nZVI partially alleviated Fe deficiency and revealed distinctive interactions between nanomaterials and plant Fe physiology. This study advances understanding of nZVI as an alternative Fe source in C. sativa and provides new insights into nanoparticle–plant nutrient dynamics.
Limitations of soil-applied non-microbial and microbial biostimulants in enhancing soil P turnover and recycled P fertilizer utilization: A study with and without plants
(2024) Herrmann, Michelle Natalie; Griffin, Lydia Grace; John, Rebecca; Mosquera-Rodríguez, Sergio F.; Nkebiwe, Peteh Mehdi; Chen, Xinping; Yang, Huaiyu; Müller, Torsten
Introduction: Phosphorus recovery from waste streams is a global concern due to open nutrient cycles. However, the reliability and efficiency of recycled P fertilizers are often low. Biostimulants (BS), as a potential enhancer of P availability in soil, could help to overcome current barriers using recycled P fertilizers. For this, a deeper understanding of the influence of BSs on soil P turnover and the interaction of BSs with plants is needed. Methods: We conducted an incubation and a pot trial with maize in which we testednon-microbial (humic acids and plant extracts) and microbial BSs (microbial consortia) in combination with two recycled fertilizers for their impact on soil P turnover, plant available P, and plant growth. Results and discussion: BSs could not stimulate P turnover processes (phosphatase activity, microbial biomass P) and had a minor impact on calcium acetate-lactate extractable P (CAL-P) in the incubation trial. Even though stimulation of microbial P turnover by the microbial consortium and humic acids in combination with the sewage sludge ash could be identified in the plant trial with maize, this was not reflected in the plant performance and soil P turnover processes. Concerning the recycled P fertilizers, the CAL-P content in soil was not a reliable predictor of plant performance with both products resulting in competitive plant growth and P uptake. While this study questions the reliability of BSs, it also highlights the necessity toimprove our understanding and distinguish the mechanisms of P mobilization in soil and the stimulation of plant P acquisition to optimize future usage.
Mapping genes for resilient dairy cows by means of across-breed genome-wide association analysis
(2025) Keßler, Franziska; Zölch, Maximilian; Wellman, Robin; Bennewitz, Jörn
Background: Indicator traits based on variance and autocorrelation of longitudinal data are increasingly used to measure resilience in animal breeding. While these traits show promising heritability and can be routinely collected, their genetic architecture remains poorly understood. We conducted GWAS for three resilience indicators across German Holstein ( n = 2,300), Fleckvieh ( n = 2,330), and Brown Swiss ( n = 1,073) dairy cattle ( Bos Taurus ) populations. The indicators included variance ( ) and autocorrelation ( ) of deviations of observed from predicted daily milk yield and variance of relative daily milk yield ( ). Additionally, we analysed a selection index combining these traits. Prior to GWAS, we examined population structure through multi-dimensional scaling (MDS) and LD patterns, revealing distinct genetic clusters for each breed and similar LD decay patterns. Results: The GWAS results confirmed the polygenic nature of resilience, with multiple genomic regions showing significant associations. Notable signals were detected on BTA5 ( ), BTA14 ( ), BTA2 and BTA8 ( ) for single indicator traits. For selection index resilience, strong suggestive SNPs are located on BTA4 , BTA16 , BTA21 , and BTA27 . Detected regions overlapped with previously reported QTLs for performance, reproduction, longevity and health, providing new insights into the biological pathways underlying dairy cattle resilience. Conclusions: Our findings demonstrate that resilience indicators have a complex genetic architecture with both breed-specific and shared components, supporting their potential use in selective breeding programs while highlighting the importance of careful trait definition.
Microbial inoculants modulate the rhizosphere microbiome, alleviate plant stress responses, and enhance maize growth at field scale
(2025) Francioli, Davide; Kampouris, Ioannis D.; Kuhl-Nagel, Theresa; Babin, Doreen; Sommermann, Loreen; Behr, Jan H.; Chowdhury, Soumitra Paul; Zrenner, Rita; Moradtalab, Narges; Schloter, Michael; Geistlinger, Joerg; Ludewig, Uwe; Neumann, Günter; Smalla, Kornelia; Grosch, Rita
Background: Field inoculation of crops with beneficial microbes is a promising sustainable strategy to enhance plant fitness and nutrient acquisition. However, effectiveness can vary due to environmental factors, microbial competition, and methodological challenges, while their precise modes of action remain uncertain. This underscores the need for further research to optimize inoculation strategies for consistent agricultural benefits. Results: Using a comprehensive, multidisciplinary approach, we investigate the effects of a consortium of beneficial microbes (BMc) ( Pseudomonas sp. RU47, Bacillus atrophaeus ABi03, Trichoderma harzianum OMG16) on maize ( Zea mays cv. Benedictio) through an inoculation experiment conducted within a long-term field trial across intensive and extensive farming practices. Additionally, an unexpected early drought stress emerged as a climatic variable, offering further insight into the effectiveness of the microbial consortium. Our findings demonstrate that BMc root inoculation primarily enhanced plant growth and fitness, particularly by increasing iron uptake, which is crucial for drought adaptation. Inoculated maize plants show improved shoot growth and fitness compared to non-inoculated plants, regardless of farming practices. Specifically, BMc modulate plant hormonal balance, enhance the detoxification of reactive oxygen species, and increase root exudation of iron-chelating metabolites. Amplicon sequencing reveals shifts in rhizosphere bacterial and fungal communities mediated by the consortium. Metagenomic shotgun sequencing indicates enrichment of genes related to antimicrobial lipopeptides and siderophores. Conclusions: Our findings highlight the multifaceted benefits of BMc inoculation on plant fitness, significantly influencing metabolism, stress responses, and the rhizosphere microbiome. These improvements are crucial for advancing sustainable agricultural practices by enhancing plant resilience and productivity.
Microbiota responses to feed particle size, calcium concentration, and phytase supplementation in broiler chickens
(2026) Rubio-Cervantes, Ismael; Wolfrum, Stephanie; Siegert, Wolfgang; Rodehutscord, Markus; Camarinha-Silva, Amélia
This research aimed to investigate the modulation of broiler-chickens gut microbiota by dietary particle size (PS), exogenous phytase, and calcium (Ca) concentration. Eight experimental diets varied in PS (fine 222 µm (PF) and coarse 309 µm (PC)), Ca concentration (4.9 and 7.2 g/kg), and exogenous phytase (0 and 1000 FTU/kg). A total of 560 Ross 308 broiler chickens were allocated to 56 metabolism units at 7 days of age and randomly assigned to each diet (7 replicates per treatment). On days 22 and 23, the birds were slaughtered, and the digesta from the gizzard, ileum, and ceca were sampled and pooled on a metabolism unit basis. DNA extraction was followed by 16S rRNA gene amplicon sequencing. Thirteen amplicon sequence variants (ASV) were present across the gizzard, ileum, and ceca, most of which were assigned to Limosilactobacillus and represented a substantial share of the total relative abundance in each section, 86 % in the gizzard, 88 % in the ileum, and 30 % in the ceca. Six of these L. reuteri ASVs were significantly enriched by coarse particle feeding, suggesting strain-specific adaptation to enhanced phosphorus availability. In the ileum, Candidatus arthromitus (p < 0.001) and Rombustia (p < 0.05) showed a significant increase in relative abundance in PC compared to PF. Phytase supplementation reduced the relative abundance of Lactobacillus and Streptococcus (p < 0.05), while higher Ca concentration decreased that of C. arthromitus (p < 0.05). In the ceca, increases in the relative abundance of Anaerostipes (p < 0.05) and Clostridia vadin BB60 were found for PC diets compared to PF (p < 0.001). The addition of phytase and Ca also significantly affected several genera, albeit the variations were less than 1 %. Dietary PS, exogenous phytase, and Ca concentration modulated the gut microbiota, specifically influencing the abundance of key microorganisms like Candidatus arthromitus, Anaerostipes, and Clostridia vadin BB60, involved in phosphorus metabolism and overall broiler chickens' health.
Nutrient–response modeling with a single and interpretable artificial neuron
(2025) Rodehutscord, Markus; Ahmadi, Hamed
Precise estimation of nutrient requirements and utilization efficiency is fundamental to nutritional sciences, yet it is mainly performed using classical nonlinear regression models. These models are interpretable but require careful selection of the functional form and initial parameter values. Flexible machine learning (ML) methods are seemingly disliked due to their perceived “black box” nature, which can obscure biological insight. A minimal and interpretable ML framework addresses this gap in nutrient–response modeling. The proposed approach uses a single artificial neuron with a hyperbolic tangent activation. Mathematically, this resembles a four-parameter sigmoidal function but with greater flexibility and distinct parameter definitions, allowing capture of the monotonic, saturating dynamics typical of essential nutrient responses. The method is enhanced with modern ML best practices, including data augmentation, Bayesian regularization, and bootstrap resampling, providing robust, uncertainty-quantified estimates of key nutritional metrics—such as asymptotic response, inflection point, and nutrient requirements—even from small datasets. Evaluations across 12 diverse datasets from poultry and fish studies, including amino acids and phosphorus, demonstrated that the single artificial neuron matches or exceeds the performance of classical models while providing full analytical transparency. The framework is implemented as a no-code graphical application, ‘NutriCurvist’, offering an easy-to-use alternative tool for nutrient-response modeling to support data-driven, precision nutrition.
Occurrence and quantification of porcine hemotrophic mycoplasmas in blood-sucking Stomoxys calcitrans
(2025) Arendt, Mareike; Hoelzle, Katharina; Stadler, Julia; Ritzmann, Mathias; Ade, Julia; Hoelzle, Ludwig E.; Schwarz, Lukas; Rossi, Franca
Hemotrophic mycoplasmas (HMs) are cell wall-less, small and uncultivable pathogens, which can cause infections in pigs with no to severe clinical signs and can contribute to significant economic losses in the pig industry. In addition to the known mechanical transmission routes of HMs (e.g., via blood-contaminated instruments or lesions from ranking fights), transmission to pigs by arthropod vectors such as Stomoxys calcitrans is being discussed. To date, there is scant available data concerning the transmission of HMs by stable flies. The objective of this study is to gain more data concerning the occurrence of HMs in Stomoxys calcitrans . Therefore, quantitative real-time PCR was conducted on different stable fly samples (surface washings and whole flies). We found Mycoplasma ( M. ) suis in 5.2% of crushed flies and 4.2% of fly wash solutions, and M. parvum was detected in 5.2% of flies and 9.4% of fly wash solutions. ‘ Candidatus ( Ca .) M. haemosuis’ was not detected in any sample. The mean bacterial loads were 2.0 × 10 2 M. suis /fly, 9.3 × 10 2 M. suis /fly wash solution and, for M. parvum , 2.4 × 10 3 M. parvum /fly and 2.1 × 10 3 M. parvum /fly wash solution. This molecular occurrence of porcine HMs in blood-sucking flies and reasonable bacterial loads in the two- to three-digit range demonstrate that these flies serve as mechanical vectors in stables and are, therefore, of epidemiological importance.
Optimizing mung bean productivity and root morphology with biofertilizers for sustainable farming
(2025) Nabati, Jaafar; Mirzaeetalarposhti, Reza; Yousefi, Afsaneh; Kurdestani, Ali Malakshahi; Nabati, Jaafar; Department of Agrotechnology, Faculty of Agriculture, Ferdowsi University of Mashhad, Mashhad, Iran; Mirzaeetalarposhti, Reza; Institute of Crop Science, University of Hohenheim, 70599, Stuttgart, Germany
The excessive use of chemical fertilizers has raised major environmental and economic concerns in legume cultivation. This study assessed the effects of various fertilizers, including biofertilizers and chemical nitrogen, on yield, root characteristics, and nutrient dynamics in two mung bean genotypes (Partow, IC418452). Field trials were conducted over a two-year period in Mashhad, Iran, using a factorial randomized block design. Treatments included two genotypes and six fertilizer levels: control, N-fixing bacteria (FLNF), P-solubilizing bacteria (PSB), K-solubilizing bacteria (KSB), a consortium (FLNF + PSB + KSB), and Urea. Yield components, biomass, root morphology, nodulation, and plant/soil NPK concentrations were measured and analyzed. Fertilizers significantly affected yield, biomass, root structure, and nutrient uptake. Urea yielded the highest biomass, grain yield, and root area, especially in Partow. However, the microbial consortium significantly improved yield components compared to the control and uniquely maximized root nodulation and inoculation percentage, indicating an enhanced biological nitrogen fixation potential. On average across the two seasons, urea increased grain yield by 46% and biomass by 41% relative to the control, whereas the microbial consortium enhanced root nodulation by 62% and yield by 32%. Significant genotype×fertilizer interactions highlighted genotype-specific responses. Nodulation correlated positively with yield. Both urea and the PGPR consortium significantly increased mung bean productivity. While urea maximized yield, the consortium provided considerable yield gains and enhanced biological nitrogen fixation potential, presenting a viable and sustainable alternative to reduce reliance on chemical nitrogen. The goal was to understand the relationships between root morphology, nutrient utilization, and yield to promote sustainable, high-yield mung bean cultivation. These findings highlight the potential of multi-strain biofertilizers to maintain mung-bean productivity while reducing dependence on synthetic N inputs.
Pathways for biodiversity enhancement in German agricultural landscapes
(2025) Sponagel, Christian; Thompson, Amibeth; Paetow, Hubertus; Mupepele, Anne‐Christine; Bieling, Claudia; Sommer, Martin; Klein, Alexandra‐Maria; Settele, Josef; Finger, Robert; Huber, Robert; Albert, Christian; Filser, Juliane; Jansen, Florian; Kleemann, Janina; Schreiner, Vera; Lakner, Sebastian
Conserving biodiversity, especially in agricultural landscapes, is a major societal challenge. Broad scientific evidence exists on the impacts of single drivers on biodiversity, such as the intensification of agriculture. However, halting biodiversity decline requires a systemic understanding of the interactions between multiple drivers, which has hardly been achieved so far. Selecting Germany as a case study, the goal of our analysis is (i) to understand how various socio‐economic drivers of biodiversity in agricultural landscapes interact at the national scale, (ii) to identify plausible pathways that most likely will lead to an improvement of biodiversity in agricultural landscapes and (iii) to discuss guiding principles for policy‐making based on the pathways. We applied the expert‐based Cross‐Impact‐Balance (CIB) methodology to the German agri‐food system (target year 2030). Seven descriptors that represent the most relevant socio‐economic drivers of biodiversity (here, we focus on species richness) in agricultural landscapes in Germany were defined. In three workshops with different groups of experts, we assessed all the interactions and impacts between these descriptors. From the workshops, seven overlapping scenarios were identified and aggregated into four main future pathways for enhancing biodiversity in agricultural landscapes. These pathways are: (1) ‘Innovation and stricter legislation’, (2) ‘Major change in protein production and CAP shift’, (3) ‘Major change in protein production and national legislation’ and (4) ‘Major social changes compensate for a lack of innovation in food production’. Socio‐economic drivers interact to varying degrees. Societal values have a strong active influence on the system, e. g. agricultural policy, whereas the orientation and objectives of agriculture, e. g. focus on public goods, are rather passively determined. Conserving biodiversity thus depends upon the evolution of societal values, European and national nature conservation and agricultural policies, innovations in plant and protein production as well as on global commodity markets. A key message for policymakers is that there are generally different, complementary options for achieving the objective of improving biodiversity. This is important when specific drivers such as the CAP cannot be steered in a particular desired direction.

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