Browsing by Subject "Bodenmikrobiologie"

Now showing 1 - 5 of 5

Carbon and nitrogen transformations in alpine ecosystems of the Eastern Alps, Austria
(2007) Koch, Oliver; Kandeler, Ellen
This thesis investigated net CH4 and net CO2 emissions from sites in the alpine region of the Eastern Alps, Austria. Four mature alpine sites (one dry meadow and three fen sites) were selected and the influence of abiotic (radiation, temperature, soil water conditions) and biotic (above-ground standing plant biomass) environmental controls on diurnal and seasonal emission patterns were studied. For a better understanding of the response of soil C- and N pools to global warming, the temperature sensitivity of activities involved in C- and N cycling were determined. The first part of the thesis dealt with net methane fluxes measured over a period of 24 months. During snow-free periods, average methane emissions of the fen sites ranged between 19 and 116 mg CH4 m-2 d-1. Mean emissions during snow periods were much lower, being 18 to 59% of annual fluxes. The alpine dry meadow functioned as a small methane sink during snow-free periods (-2.1 mg CH4 m-2 d-1 (2003); -1.0 mg CH4 m-2 d-1 (2004)). The diurnal and seasonal methane uptake of the dry meadow was positively related to soil temperature and negatively related to water-filled pore space (wfps). In the fen, the seasonal methane fluxes were related to soil temperature and groundwater table. The live above-ground standing plant biomass contributed to net methane fluxes only at those sites with higher water table positions. This study provided evidence that alpine fens acted as methane sources throughout the year, whereas an alpine meadow site acted as a net methane sink during snow-free periods. In the second part of the thesis the CO2 balance was estimated based on diurnal flux measurements and on the influence of photosynthetic active radiation (PAR), plant green area index (GAI), soil temperature and wfps. The daylight net ecosystem CO2 emission rate was influenced by PAR and GAI throughout snow-free seasons. The seasonal net CO2 emission rate at night was positively related to soil temperature, while low wfps reduced flux rates at the meadow and at the driest fen study site but reinforced carbon loss at the wetter fen sites. The daily average ecosystem net CO2 gain during snow-free periods at the meadow was 3.5 g CO2 m-2 d-1 and at the fen sites between 1.5 and 3.4 g CO2 m-2 d-1. The mean average daily CO2 emission during snow periods was low, being -0.9 g CO2 m-2 d-1 for the meadow and between -0.2 and -0.7 g CO2 m-2 d-1 for all fen sites. All sites function as significant annual net carbon sinks, with a net carbon gain from 50 to 121 g C m-2 a-1 (averaged over both years), irrespective of water balance. The results indicate that alpine fen sites, that have built up a large carbon stock in the past, are not expected to gain a further carbon surplus compared with meadows under the current climate. Temperature is important for regulating biological activities. The third part of the thesis focused on temperature sensitivity of soil C mineralization, N mineralization and potential enzyme activities involved in the C- and N cycle (ß-glucosidase, ß-xylosidase, N-acetyl-ß-glucosaminidase, tyrosine aminopeptidase, leucine aminopeptidase) over a temperature range of 0-30°C. The objective was to calculate Q10 values and relative temperature sensitivities (RTS) and to quantify seasonal (summer, autumn, winter) and site-specific factors. The Q10 values of C mineralization were significantly higher (average 2.0) than for N mineralization (average 1.7). The Q10 values of both activities were significantly negatively related to soil organic matter quality. In contrast, the chemical soil properties, microbial biomass and sampling date did not influence Q10 values. Analysis of RTS showed that the temperature sensitivity increased with decreasing temperature. The C- and N mineralization and potential aminopeptidase activities (tyrosine, leucine) showed an almost constant temperature dependence over 0-30°C. In contrast, ß-glucosidase, ß-xylosidase and N-acetyl-ß-glucosaminidase showed a distinctive increase in temperature sensitivity with decreasing temperature. Low temperature at the winter sampling date caused a greater increase in the RTS of all activities than in autumn and summer. Our results indicate a disproportion of the RTS for potential enzyme activities of the C- and N cycle and a disproportion of the RTS for easily degradable C compounds (ß-glucose, ß-xylose) compared with the C mineralization of soil organic matter. Thus, temperature may play an important role in regulating the decay of different soil organic matter fractions.
Function and composition of the soil microbial community in calcareous grassland exposed to elevated atmospheric carbon dioxide
(2003) Ebersberger, Diana; Kandeler, Ellen
Terrestrial ecosystems generally respond to rising atmospheric carbon dioxide (CO2) concentrations with increased net primary productivity and increased water use efficiency. This may change the amount and quality of organic substances entering the soil and fuelling microbial metabolism. Soil microorganisms and their activity might also be affected by increased soil moisture at elevated CO2. This thesis was designed to analyse the response of the soil microbial community in a species-rich calcareous grassland in the Swiss Jura Mountains, which had been exposed to ambient and elevated CO2 concentrations (365 and 600 ppm) for six growing seasons. In the first study, laboratory incubation experiments were conducted to explore the relationship between litter quality under elevated carbon dioxide and enzymes involved in carbon cycling. Naturally senescent, mixed litter from the long-term field experiment was incubated with soil material for 10, 30 and 60 days. Soil samples were then obtained close to the litter layer using a microtome cutting device. Litter and soil samples were analysed for invertase and xylanase activity. The lower litter quality produced under elevated CO2, i.e. wider C/N ratio, yielded lower invertase and xylanase activities of litter. Litter addition stimulated activities in adjacent soil. Invertase activities of adjacent soil were not affected by litter quality, while soil xylanase activity was higher in soil compartments adjacent to litter from elevated CO2 plots. The reduced enzyme activities of litter produced under elevated CO2 can slow decomposition, at least during the initial stages. Since the effects of litter quality on enzyme activities in adjacent soil were small, we conclude that CO2-induced belowground C-inputs (e.g. increased root mass) and altered moisture conditions are more important controls of enzyme activities than altered litter quality. In the second study, functional diversity of the soil microbial community was assessed by analysing N-mineralisation and activities of enzymes of the C-, N-, P- and S-cycle of soil samples taken in spring and summer 1999, in the 6th season of CO2 exposure. In spring, N-mineralisation increased significantly by 30% at elevated CO2, while there was no significant difference between treatments in summer. The response of soil enzymes to CO2 enrichment was also more pronounced in spring, when alkaline phosphatase and urease activities were increased most strongly, by 32% and 21%, respectively. In summer, activity differences between CO2 treatments were greatest in the case of urease and protease (+21% and +17% at elevated CO2). The significant stimulation of N-mineralisation and enzyme activities at elevated CO2 was probably caused by higher soil moisture and/or increased root biomass. In the third study, soil microbial community structure of soil samples taken in spring and summer 1999 was analysed by means of PLFA profiles and 16S rDNA fingerprints obtained by PCR-DGGE. PLFA profiles were not affected by elevated CO2. Ordination analysis of DNA fingerprints revealed a significant relation between CO2 enrichment and variation in DNA fingerprints. This variation must be attributed to low intensity bands because dominant bands did not differ between treatments. Diversity of the bacterial community (number of bands in DNA fingerprints and Shannon indices) was not affected. The observed minute, but significant changes in the structure of the soil bacterial community might be caused by changes in the quality of rhizodeposits at elevated CO2. These could either result from altered rhizodeposition of individual plants or from altered species composition of the calcareous grassland.The 4th part of the thesis compiles data on soil microorganisms, soil fauna, soil structure and nitrogen cycle of calcareous grassland after CO2 exposure for six growing seasons. Microbial biomass, soil basal respiration and the metabolic quotient were not altered significantly. PLFA analysis revealed no significant shift in the ratio of fungi to bacteria. Protozoans, bacterivorous and fungivorous nematodes, acarians, collembolans, and root-feeding nematodes were not affected by elevated CO2. Total nematode numbers averaged slightly lower (-16%) and nematode mass was significantly reduced (by 43%) due to fewer large-diameter nematodes classified as omnivorous and predacious. CO2 exposure resulted in a shift towards smaller aggregate sizes; this was caused by higher soil moisture. Reduced aggregate sizes result in reduced pore neck diameters. This can confine the locomotion of large-diameter nematodes and possibly accounts for their decrease. The CO2 enrichment also affected the nitrogen cycle. N stocks in living plants and surface litter increased, but N in soil organic matter and microorganisms remained unaltered. N mineralisation increased considerably, but microbial N did not differ between treatments, indicating that net N immobilization rates were unaltered.
Hidden miners – the roles of cover crops and soil microorganisms in phosphorus cycling through agroecosystems
(2019) Hallama, Moritz; Pekrun, Carola; Lambers, Hans; Kandeler, Ellen
Background Phosphorus (P) is a limiting nutrient in many agroecosystems and costly fertilizer inputs can cause negative environmental impacts. Cover crops constitute a promising management option for sustainable intensification of agriculture. However, their interactions with the soil microbial community, which is a key driver of P cycling, and their effects on the following crop, have not yet been systematically assessed. Scope We conducted a meta-analysis of published field studies on cover crops and P cycling, focusing on plant-microbe interactions. Conclusions We describe several distinct, simultaneous mechanisms of P benefits for the main crop. Decomposition dynamics, governed by P concentration, are critical for the transfer of P from cover crop residues to the main crop. Cover crops may enhance the soil microbial community by providing a legacy of increased mycorrhizal abundance, microbial biomass P, and phosphatase activity. Cover crops are generally most effective in systems low in available P, and may access ‘unavailable’ P pools. However, their effects on P availability are difficult to detect by standard soil P tests, except for increases after the use of Lupinus sp. Agricultural management (i.e. cover crop species selection, tillage, fertilization) can improve cover crop effects. In summary, cover cropping has the potential to tighten nutrient cycling in agricultural systems under different conditions, increasing crop P nutrition and yield.
Soil microorganisms as hidden miners of phosphorus in soils under different cover crop and tillage treatments
(2022) Hallama, Moritz; Kandeler, Ellen
Phosphorus (P) is one of the most limiting plant nutrients for agricultural production. The soil microbial community plays a key role in nutrient cycling, affecting access of roots to P, as well as mobilization and mineralization of organic P (Porg). This thesis aimed to better understand the potential of cover crops to enhance plant-soil-microbe interactions to improve the availability of P. This dissertation consists of a meta-analysis of and two field experiments. The used methods showed that microbial P, the activity of P-cycling enzymes and PLFAs increased under cover crops, indicating an enhanced potential for organic P cycling. Gram- positive and Gram-negative bacteria, and to a lesser extent also arbuscular mycorrhizal fungi, increased their abundance with cover crops. However, saprotrophic fungi could benefit most from the substrate input derived from cover crop roots or litter. Enzyme-stable Porg shifted towards pools of a greater lability in the active soil compartments (rhizosheath and detritusphere). The effects of agricultural management, such as cover crop species choice and tillage, were detectable, but weaker compared to the effect of the presence of cover crops. With the obtained results, the research aims of this thesis could be successfully addressed. We were able to confirm that cover crops have the potential to improve main crops’ access to P. Furthermore, we presented and discussed three pathways of P benefit. In the plant biomass pathway, P is cycled through cover crop biomass and becomes available for the main crop upon litter decomposition. The microbial enhancement pathway describes how the cover crop’s interaction with soil microbes increases their abundance and activity, thereby increasing the availability of Porg. Some cover crop species seem to be capable of utilizing a biochemical modification pathway, where changes in the sorption capacity of the soil result in a greater quantity of plant-available phosphate. However, the latter pathway was apparently not important in the crop rotations used in our field experiments. The data also allowed us to characterize ways in which plant-soil-microbe interactions under cover crops affected the relationship of soil microbial functions to the enzymatic availability of Porg pools. Cover crops increased the abundance and activity of microbes, especially fungi, as well as microbial P. This enhancement in P-cycling potential shifted Porg toward pools of greater availability to added enzymes. However, the relation between enzymes and Porg pools is complex and is possibly affected by soil P composition and other site characteristics, indicating the need for further research in this area. Finally, we elucidated how the choice of cover crop species and agricultural management can shift the relative importance of the pathways for the P benefit of the main crop, while site-specific management allows farmers to adapt to local conditions and to optimize the functions of their agroecosystems. In conclusion, our results indicate that the pathways of cover crop derived P benefit take place simultaneously. We confirmed the potential of cover crop biomass for the cycling of P, and we suggest that our observed increases in the availability of soil Porg are related to microbial abundance and activity. The interactions of cover cropping and tillage indicate also that P benefit can be optimized by management decisions. Finally, these new insights into soil phosphorus cycling in agroecosystems have the potential to support further development of more sustainable agricultural systems.
The biocontrol agent Fusarium oxysporum f. sp. strigae - Monitoring its environmental fate and impact on indigenous fungal communities in the rhizosphere of maize
(2016) Zimmermann, Judith; Cadisch, Georg
The fungal biocontrol agent (BCA) Fusarium oxysporum f. sp. strigae (Fos) has proven to be effective in the suppression of the parasitic weed Striga hermonthica, which causes substantial yield losses in cereals in Sub-Saharan Africa. A prerequisite for widespread implementation of the biocontrol technology is the official registration of the BCA Fos by country authorities in Sub-Saharan Africa. The FAO and OECD institutions established international registration regulations to ensure the environmental safety of microbial BCAs. The present thesis aimed on assessing the potential of the BCA Fos to meet these registration requirements and was, therefore, based on the following two major objectives: (1) A specific DNA-based monitoring tool for Fos was developed which allows following its population kinetics in soils as driven by contrasting environmental impacts, such as soil type, plant growth stage and seasonality. (2) Risk assessment studies were conducted to assess potential side effects of Fos inoculation on non-target soil microorganisms.