Browsing by Subject "Intestine"

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Der Glucocorticoidrezeptor des Schweins: Herstellung und Charakterisierung eines polyklonalen Antiserums, sowie Studien zur Verteilung des GCR im Intestinaltrakt von Ebern und Kastraten
(2002) Gutscher, Monika; Claus, Rolf
Glucocorticoids are well known to be essential for many physiological and developmental processes. Such functions include their effects on carbohydrate and protein metabolism and their regulatory influences on the immune system. In cell regulation they play a dose-dependent key role for differentiation and apoptosis. In rapidly renewing tissues the stringent control of these mechanisms is central to the maintenance of tissue homeostasis. ln the gastrointestinal tract both the adaption to changing nutrients and the presentation with a vast array of different types of antigens, including potential pathogens and harmless dietary antigens requires a granular regulation of cell proliferation, differentiation and cell death. In the pig, the differences in the turn-over rate for instance between skeletal muscle and the gut tissue could be attributed to different GCR concentrations respectively. This explains the tissue specific sensitivty on circulating corticoids. Thus studies on GCR distribution contributes to the clarification of the role of glucocorticoids in the regulation of these mechanisms in the intestinal tract. In the pig, so far receptor detection has been performed by radio ligand binding assays, which only measures steroid unoccupied non-activated receptors in the cytoplasm. Selective GCR antibodies react with both occupied and unoccupied GCR. In addition, antibodies enable celltype specific detection of the GCR in complex tissues by immunocytochemistry. The aim of this investigation was the production of porcine GCR-specific polyclonal antibodies by detailed analysis of the cDNA sequence of the GCR and the recombinant expression of a suitable antigen fragment. A fragment with 2.1 kb of the GCR cDNA (gcr2.1) was sequenced. Based on Blast sequence analysis a GCR antigen fragment for recombinant expression was selected from the modulatory region (GCRmr) and cloned in a T7-expression system as a His-tag fusion protein. After affinity chromatographic und preparative purification The anti-pGCR-antibodies bind the pGCRmr antigen with high affinity, as well as the denatured receptor in western blot analysis. In additon, immunoprecipitation assays demonstrated that cytosolic GCR is recognized regardless of whether it is unoccuppied or occuppied with dexamethasone. Thus, the antiserum is able to bind the native GCR both in its inactivated form as a multiprotein complex in association with HSP90 and in its activated form with shed HSP 90. Our investigations with immunoprecipitation assays support the applicability of the anti-pGCR antiserum in immunohistochemistry. The characterized antibodies were implemented in immunohistochemy for studies of distribution and localization of the GCR in the small bowl and colon of boars and barrows. The intracellular distribution of the GCR was examined by western blot assays. Immunohistochemical studies showed an increased number of immunostained GCR in the colon compared with the small intestine, as has been shown earlier with ligand-binding assays. 32,9 % and 14,5 % of the cells of the lamina propria were GCR immunoreactive in the small intestine of barrows and boars. In the colon 49,3 % and 43,3 % showed immunostaining. Epithelial cells showed a reversed pattern compared to the lamina propria in both groups. The number of GCR immunoreactive cells in barrows and boars decreased from 9,6 % and 9 % in the small intestine to 5,4 and 5,6 % in the colon, respectively. Comparison of both groups ? barrows and boars - revealed significant differences in the number of GCR immunoreactive cells in the lamina propria of the small bowl. Boars showed a decreased GCR expression of 10 % in the duodenum and 30 % in the jejunum. The number of GCR immuostained colonic cells amounts to 36,9 % in the colon ascendens and 49,2% in the colon descendens of boars and 47,5 % and 51 % in barrows. Studies of the subcellular localization by western blot analysis of cytosolplasmic and nuclear proteins demonstrated that in both groups in the ileum a higher amount of GCR was translocated into the nucleus. In the colon the number of cytoplasmic GCR was higher. The different subcellular GCR distribution in the two segments of the intestine can be explained by the increased expression of 11â-hydroxysteroid dehydrogenase 2 in the colon. 11â-HSD 2 inactivates cortisol and thus inhibits receptor activation and thereby translocation to the nucleus.
Mechanismen der Mastzellaktivierung durch gram-negative Bakterien und Bakterienprodukte aus der Darmflora.
(2006) Krämer, Sigrid; Bischoff, Stephan C.
The role of mast cells (MC) as effector cells in IgE dependent processes like the type 1 allergy has been known for a long time. During the decade, it has been shown that MC are also involved in other pathophysiological processes such as mucosal polyposis, rheumatoid arthritis, inflammatory bowl disease, tissue fibrosis, and atherosclerosis. Furthermore, MC play an important role in the regulation of host defense against microbes, tissue remodeling processes, and neuro-immunology-interaction. The first aim of the present study was to clarify the question whether human intestinal MC express toll-like receptors (TLR), which recognize conserved bacterial and viral components, and can MC be activated through TLR-ligands. The second major focus of the present study was to investigate if the stimulation of human intestinal MC with different E. coli and Shigella strains, respectively, results in an activation of MC and to identify the underlying mechanism(s). Accordingly, human intestinal MC were isolated from surgery tissue with a mechanical and enzymatical protocol. The purity of the MC cultures used in all experiments was between 98 and 100% which was achieved by positive selection (MACS). We could show, that human intestinal MC express mRNA for TLR 1, 2, 3, 4, 5, 6, 8, and 9. However, neither the stimulation with LPS (lipopolysaccharide, TLR 4 ligand), LTA (lipoteichoic acid, TLR 2 ligand), Zymosan (TLR 2 ligand), poly I:C (polyinosinic-polycytidylic acid, TLR 3 ligand), R848 (TLR 7/8 ligand), CpG (C poly G oligo-desoxy-nucleotide, TLR 9 ligand) and non CpG, respectively resulted in a release of histamine, leucotriens, TNF-alpha, or IL-8. Furthermore, mRNA expression levels of TNF-alpha and IL-8 were not induced by any of the treatments. Similar results where found when human intestinal MC were stimulated with E. coli (O101:H-) isolated from human faeces or the probiotic strain E. coli Nissle 1917. Even after stimulation with pathogenic bacteria strains such as the invasive S. flexneri M90T and the fimbriated E. coli, respectively, no induction of any of the parameters mentioned above was found. However, E. coli strains activate the intracellular signal molecule and transcription factors ERK1/2, c-Fos, and AP1, but this activation failed to induce a complete immune answer. In contrast, the hemolytic E. coli stains ATCC 25922 and ATCC 35218 provoked strong activation of intestinal MC. Using the isogenic hemolysin negative E. coli mutants and the hemolysin positive transformants of the probiotic E. coli Nissle 1917 it was shown, that human intestinal MC are sensitive target cells for E. coli alpha hemolysin. Stimulation of MC with sublytic concentration of hemolysin resulted in an induction of TNF-alpha, IL-3, IL-5, IL-6, IL-8 mRNA expression, the release of histamine as well as leucotrien. This activation was found to be regulated by calcium dependent signal cascades. Inhibition of intracellular signal molecules showed that the activation depends on L-typ calcium channels, calcineurin, NFAT and NFkappaB. Prolonged infection with hemolytic E. coli strains resulted in lysis of intestinal MC indicating a biphasic activation of hemolysin.
Novel bacterial species from the chicken gastrointestinal tract and their functional diversity
(2023) Rios Galicia, Bibiana; Seifert, Jana
The digestive system of chicken presents different physicochemical conditions along the gastrointestinal tract (GIT), shaping an individual microbial profile along sections with different metabolic capacities and divergence on the adaptations to the environment. Efforts to obtain cultivable bacteria originating from the upper region of chicken GIT enrich the reference genome database and provide information about the site- specific adaptations of bacteria colonizing such GIT sections allowing to understand the metabolic profile and adaptive strategies to the environment. However, the lack of sufficient reference genomes limits the interpretation of sequencing data and restrain the study of complex functions. In this study, 43 strains obtained from crop, jejunum and ileum of chicken were isolated, characterised and genome analysed to observe their metabolic profiles, adaptive strategies and to serve as future references. Eight isolates represent new species that colonise the upper gut intestinal tract and present consistent adaptations that enable us to predict their ecological role, expanding our knowledge on the adaptative functions. Strains of Limosilactobacillus were found to be more abundant in the crop, while Ligilactobacillus dominated the ileal digesta. Isolates from crop encode a high number of glycosidases specialised in complex polysaccharides compared to strains isolated from jejunum and ileum. While isolates from jejunum and ileum encode a higher number of genes that interact with the host such as collagenases and hyaluronidases, indicating preferential persistence and adaptations along the GIT. These results represent the first repository of bacteria obtained from the crop and small intestine of chicken using culturomics, improving the potential handling of chicken microbiome with biotechnological applications
Strain-resolved analysis of the human intestinal microbiota
(2022) Podlesny, Daniel; Fricke, Florian W.
The gut microbiota is ascribed a crucial role in human health, particularly in regulating immune and inflammatory responses, which is why it is being associated with a wide range of diseases, including obesity, diabetes, and cancer. Nonetheless, fundamental ecological questions of microbiome establishment, stability and resilience, as well as its transmission across hosts and generations remain incompletely understood, partly due to the lack of methods for high-resolution microbiome profiling. New insights in this field can therefore directly contribute to the development of bacterial and microbiota-based therapies. This work introduces SameStr, a novel bioinformatic program for strain-resolved metagenomics that allows for the specific tracking of microbes across samples, enabling the detection and quantification of microbial transmission and persistence, as well as the observation of direct strain competition. Deployed across cohorts to process over 4200 metagenomes, SameStr enabled analysis of the microbiome with unprecedented phylogenetic resolution. The data included both publicly available metagenomes and sequence data generated in collaboration with our research partners, and was examined using multivariate statistics and machine learning frameworks. First, the establishment and development of the neonatal microbiota was studied, revealing a birth mode-dependent vertical transmission of the maternal microbiota. The microbiota of neonates born by cesarean section was characterized by increased relative abundance of oxygen-tolerant and atypical organisms and showed signs of a delayed establishment of a strictly anaerobic gut environment in these children. Such birth mode-dependent differences diminished over time, yet were measurable within the first two years of life. Furthermore, strain analysis verified the transmission and colonization of parental microbes, which indicated a possible lifelong colonization by microbes from selected species. The temporal persistence of microbes was also characterized in healthy adults, revealing similar taxonomy-dependent patterns of stability. For some species, persistence has been demonstrated both in children and in adults over a period of at least two years. These species are known for their capability to metabolize host-derived glycans found both in breastmilk and intestinal mucus, pointing to a potential strategy for effective cross-generational microbiota transmission, and warranting additional research to assess the implications of their disturbed transfer for long-term health. Since their specificity allows assignment to individual hosts, fingerprints of individual microbial strains offer the potential to be used in forensics and data quality control applications. Finally, to gain new insights into the microbiota dynamics during Fecal Microbiota Transplantation (FMT), microbial strain transmission was analyzed in the context of a diverse set of patient, microbiome, and clinical conditions. In the analyzed studies, FMT was used for the experimental treatment of a variety of diseases, including colonization with drug-resistant and pathogenic microbes, metabolic and inflammatory bowel diseases, and as an adjunct to the immunotherapeutic treatment of cancer. Analyses uncovered what appear to be the universal drivers of post-FMT microbiota assembly, including clinical and ecological factors that are important for successful transplantation of donor strains. In particular, the relevance of the microbiota dysbiosis of the recipient was emphasized, which was inducible by pre-treating the patient with antibiotics or laxatives. Presumably, this can open up ecological niches in the patients intestines, which favors colonization with donor strains. Colonization rates did not play a role for the treatment success of recurrent C. difficile infections and inflammatory bowel disease, but indicated a trend associated with an improved immune response in cancer patients. Concerningly, the transfer of an atypical and potentially pro-inflammatory microbial community from one donor was also observed, calling for further investigations into the immediate and long-term clinical consequences of FMT. These analyses demonstrate the advantages of a strain-based microbiome analysis. Due to the achieved methodological accuracy, strain-resolved microbial dynamics could be precisely disentangled when comparing longitudinal samples from healthy adults as well as parent-child and patient-donor pairs. This revealed taxonomic, clinical, and ecological factors that are critical to microbiome assembly, including microbial transmission, persistence, and competition. Together, these findings lay the groundwork for future developments of precision personalized microbiota modulation therapies.