Genome comparison of ‘Candidatus Phytoplasma rubi’ with genomes of other 16SrV phytoplasmas highlights special group features

dc.contributor.authorBöhm, Jan Werner
dc.contributor.authorDuckeck, Dominik
dc.contributor.authorDuduk, Bojan
dc.contributor.authorSchneider, Bernd
dc.contributor.authorKube, Michael
dc.date.accessioned2024-09-03T07:30:29Z
dc.date.available2024-09-03T07:30:29Z
dc.date.issued2023de
dc.description.abstractPhytoplasmas are associated with important bacterial diseases, causing severe symptoms in agricultural and ornamental crops. ‘Candidatus Phytoplasma rubi’, associated with the Rubus stunt in raspberries (Rubus idaeus) and blackberries (Rubus subgenus Rubus), causes shortened internodes, elongated sepals, proliferation, phyllody, and virescence. The recently published genome of ‘Ca. P. rubi’ RS enabled a comprehensive genomic comparison to the complete genomes of 16SrV phytoplasmas, comprising strains of the flavescence dorée-associated phytoplasma CH and two ‘Candidatus Phytoplasma ziziphi’ strains. Besides the typical transporters and metabolic features of phytoplasmas, the phosphorolysis of sucrose and the utilization of the carboxylic acid L-lactate became apparent for the 16SrV-group. With respect to the effector repertoire and the encoded immunodominant membrane proteins involved in host colonization, the group revealed conserved features that comprise the variable membrane proteins A and B. However, SAP11- and SAP54 orthologs were limited to ‘Ca. P. rubi’ RS and ‘Ca. P. ziziphi’. Genome-sequence-based phylogenetic analysis supports the close relationship of these genomes relative to alder yellows phytoplasmas. The analyses supported the impact of the mobilome on phytoplasma evolution but also highlighted that there is the possibility of identifying phytoplasmas with a larger metabolic repertoire in the future.en
dc.identifier.urihttps://hohpublica.uni-hohenheim.de/handle/123456789/16204
dc.identifier.urihttps://doi.org/10.3390/applmicrobiol3030075
dc.language.isoengde
dc.rights.licensecc_byde
dc.source2673-8007de
dc.sourceApplied Microbiology; Vol. 3, No. 3 (2023), 1083-1100de
dc.subjectElm yellows phytoplasmas
dc.subjectRubus stunt
dc.subjectFlavescence dorée
dc.subjectMetabolism
dc.subjectEffector repertoire
dc.subject.ddc630
dc.titleGenome comparison of ‘Candidatus Phytoplasma rubi’ with genomes of other 16SrV phytoplasmas highlights special group featuresen
dc.type.diniArticle
dcterms.bibliographicCitationApplied microbiology, 3 (2023), 3, 1083-1100. https://doi.org/10.3390/applmicrobiol3030075. ISSN: 2673-8007
dcterms.bibliographicCitation.issn2673-8007
dcterms.bibliographicCitation.issue3
dcterms.bibliographicCitation.journaltitleApplied microbiology
dcterms.bibliographicCitation.volume3
local.export.bibtex@article{Böhm2023, url = {https://hohpublica.uni-hohenheim.de/handle/123456789/16204}, doi = {10.3390/applmicrobiol3030075}, author = {Böhm, Jan Werner and Duckeck, Dominik and Duduk, Bojan et al.}, title = {Genome Comparison of ‘Candidatus Phytoplasma rubi’ with Genomes of Other 16SrV Phytoplasmas Highlights Special Group Features}, journal = {Applied microbiology}, year = {2023}, volume = {3}, number = {3}, }
local.export.bibtexAuthorBöhm, Jan Werner and Duckeck, Dominik and Duduk, Bojan et al.
local.export.bibtexKeyBöhm2023
local.export.bibtexType@article

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