Institut für Bodenkunde und Standortslehre

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Assessment of hydrology and dynamics of pesticides in a tropical headwater catchment in Northern Thailand
(2013) Hugenschmidt, Cindy; Streck, Thilo
The dissertation deals with assessment of hydrology and the dynamics of pesticides in a tropical headwater catchment in northern Thailand. Rainfall and runoff characteristics are recorded and investigated, pesticide dynamics during single events are monitored and studied. Finally, a hydrological model is applied.
Associations of short-range ordered aluminosilicates and organic matter: formation, properties and stabilization of organic matter
(2023) Lenhardt, Katharina Raphaela; Rennert, Thilo
Short-range ordered aluminosilicates (SROAS) typically form during the weathering of volcanic ejecta by polymerization of released aluminium (Al) and silicon (Si). These minerals exhibit variable chemical composition and crystallinity. Tubular imogolite is a SROAS with long-range order; its locally defined Si configuration occurs also in poorly ordered SROAS. Interactions of SROAS and organic matter (OM) promote carbon (C) accrual by protecting OM from microbial degradation in the long term; however, the fundamental processes are poorly understood. Stable mineral-organic associations may form by adsorption of dissolved OM (DOM) on SROAS surfaces and by co-precipitation of DOM with SROAS during mineral formation. The objective of this study was to elucidate the chemical interactions between DOM and SROAS by both processes, and to assess the stability of OM sorbed by SROAS. Therefore, the impact of SROAS composition on DOM adsorption, partitioning of OM moieties by adsorption and co-precipitation, the structure of co-precipitates, and the degradability of co-precipitated OM was investigated. A method to synthesize SROAS at ambient conditions was developed to mimic the surface properties of natural weathering products. Characterization of SROAS structure by solid-state 27Al and 29Si nuclear magnetic resonance (NMR) spectroscopy and Fourier transform infrared (FTIR) spectroscopy evinced a close similarity of synthetic SROAS to their natural analogues. Aluminium-rich SROAS (molar Al:Si>2) resembled proto-imogolite, with Al mainly in octahedral coordination and ≥38% of Si nuclei exhibiting an imogolite-like configuration. Silicon-rich SROAS (molar Al:Si = 1.4) contained tetrahedral Al and Si existed largely in ill-defined environments. Analyses of the specific surface area by nitrogen adsorption revealed marked aggregation of Al-rich SROAS, which was less pronounced in Si-rich SROAS. These results show that the poor crystallinity of Al-rich SROAS permits a very dense spatial arrangement of mass at the submicron scale, while Si incorporation restricts aggregation. Interactions of SROAS and DOM were studied using natural DOM with heterogeneous composition collected in situ from a Dystric Cambisol at two depths, and by water extraction of litter. Solid-state 13C-NMR and FTIR spectroscopy revealed a major contribution of oxidized aromatic moieties to soil DOM, likely originating from lignin degradation, while litter DOM was predominantly composed of carbohydrates. Soil DOM adsorption was driven by surface accessibility and was thus larger for Si-rich SROAS than for Al-rich SROAS, showing the importance of SROAS physical properties for OM retention. Aromatic products of lignin degradation preferentially adsorbed on SROAS, inducing relative enrichment of aliphatic substances, particularly carbohydrates, in the residual DOM. Topsoil DOM adsorption depended more strongly on contact time (1–168 h) than subsoil DOM adsorption, possibly due to qualitative differences of the aromatic fraction. Associations formed by co-precipitation contained more C than adsorption complexes. As Al interacted preferentially with oxidized aromatic compounds, co-precipitation of DOM increased as a function of aromatic C. Nevertheless, marked sorption of carbohydrates from litter DOM evinced possible retention of substances with low affinity for Al by co-precipitation, in contrast to adsorption. Time-dependent (1–72 h) structural evolution of SROAS in the absence of DOM was examined to resolve the mechanisms of SROAS formation. Irrespective of the initial molar Al:Si ratio, amorphous precursors formed by olation during the first hour. After 72 h, up to 50% of Si nuclei exhibited imogolite-like configuration, showing rapid development of short-range order. Dissolved OM interfered in condensation of Al and Si, causing partial exclusion of Si, and slowed crystallisation of the octahedral Al sheet, promoting ill-defined Si species in the co-precipitates. Hence, DOM likely impedes assembly of precursors into structurally ordered particles, in particular, oxidized aromatic DOM in topsoils. The binding strength of DOM to SROAS surfaces may be affected by Si incorporation due to structure modifications. Thus, a mechanistic adsorption study was conducted with oxalic, salicylic and octanoic acid as models of functional moieties in DOM. Adsorption of oxalic and salicylic acid was up to 80–90% lower for Si-rich SROAS than for Al-rich SROAS. Rapid (<1 min) release of hydroxyls, indicating ligand exchange, was observed only for oxalic and salicylic acid, suggesting octanoic acid interacted electrostatically with SROAS surfaces. Chelate complexes of oxalic acid and partial inner-sphere binding of salicylic acid on both SROAS were identified by FTIR spectroscopy. Fast adsorption kinetics were retraced by changes in electrical conductivity using a stopped-flow technique. Ligand exchange by oxalate proceeded at a similar rate as complexation of monomeric Al3+, showing its binding to octahedral Al. Hence, the much lower susceptibility of Si-rich SROAS to ligand exchange with carboxyl groups is caused by tetrahedral Al. Consequently, little OM may be stabilized by chemical bonds with Si-rich SROAS. The degradability of co-precipitated carbohydrates was tested by addition of b-glucosidase, a microbial extracellular enzyme, at optimal concentration and quantification of the reaction product glucose. Glucose release was analysed for initial DOM, co-precipitated OM and for residual DOM to account for compositional changes by co-precipitation. As a result of carbohydrate enrichment in residual DOM, its degradability by b-glucosidase increased. Minor amounts of glucose were released from co-precipitated carbohydrates, showing their restricted accessibility for enzymes due to occlusion. Formation of SROAS in soils likely induces preferential association of lignin degradation products with the mineral matrix and alters the composition of OM introduced to the subsoil. Otherwise easily degradable OM with low affinity for SROAS surfaces can be effectively protected from mineralization by co-precipitation. As the structure of SROAS reflects formation processes and affects their reactivity, future research characterizing natural SROAS will give mechanistic insights into C sequestration and potentially other vital soil functions.
Bayesian multi-purpose modelling of plant growth and development across scales
(2024) Viswanathan, Michelle; Streck, Thilo
Crop models are invaluable tools for predicting the impact of climate change on crop production and assessing the fate of agrochemicals in the environment. To ensure robust predictions of crop yield, for example, models are usually calibrated to observations of plant growth and phenological development using different methods. However, various sources of uncertainty exist in the model inputs, parameters, equations, observations, etc., which need to be quantified, especially when model predictions influence decision-making. Bayesian inference is suitable for this purpose since it enables different uncertainties to be taken into account, while also incorporating prior knowledge. Thus, Bayesian methods are used for model calibration to improve the model and enhance prediction quality. However, this improvement in the model and its prediction quality does not always occur due to the presence of model errors. These errors are a result of incomplete knowledge or simplifying assumptions made to reduce model complexity and computational costs. For instance, crop models are used for regional scale simulations thereby assuming that these point-based models are able to represent processes that act at regional scale. Additionally, simple statistical assumptions are made about uncertainty in model errors during Bayesian calibration. In this work, the problems arising from such applications are analysed and other Bayesian approaches are investigated as potential solutions. A conceptually simple Bayesian approach of sequentially updating a maize phenology model, an important component in plant models, was investigated as yearly observation data were gathered. In this approach, model parameters and their uncertainty were estimated while accounting for observation uncertainty. As the model was calibrated to increasing amounts of observation data, the uncertainty in the model parameters reduced as expected. However, the prediction quality of the calibrated model did not always improve in spite of more data being available for potentially improving the model. This discrepancy was attributed to the presence of errors in the model structure, possibly due to missing environmental dependencies that were ignored during calibration. As a potential solution, the model was calibrated using Bayesian multi-level modelling which could account for model errors. Furthermore, this approach accounted for the hierarchical data structure of cultivars nested within maize ripening groups, thus simultaneously obtaining model parameter estimates for the species, ripening groups and cultivars. Applying this approach improved the model's calibration quality and further aided in identifying possible model deficits related to temperature effects in the post-flowering phase of development and soil moisture. As another potential solution, an alternative calibration strategy was tested which accounted for model errors by relaxing the strict statistical assumptions in classical Bayesian inference. This was done by first acknowledging that due to model errors, different data sets may yield diverse solutions to the calibration problem. Thus, instead of fitting the model to all data sets together and finding a compromise solution, a fit was found to each data set. This was implemented by modifying the likelihood, a term that accounts for information content of the data. An additive rather than the classical multiplicative strategy was used to combine likelihood values from different data sets. This approach resulted in conservative but more reliable predictions than the classical approach in most cases. The classical approach resulted in better predictions only when the prediction target represented an average of the calibration data. The above-mentioned results show that Bayesian methods with representative error assumptions lead to improved model performance and a more realistic quantification of uncertainties. This is a step towards the effective application of process-based crop models for developing suitable adaptation and mitigation strategies.
Bedeutung der Stickstoffumsetzung und externer Stickstoffquellen für die Entwicklung von FFH-Mähwiesen in Baden-Württemberg
(2023) Kukowski, Sina Louise; Streck, Thilo
1. AIM AND OBJECTIVES OF THE STUDY. The condition of the species-rich lowland hay meadows (habitat type 6510) in Germany is increasingly deteriorating. One cause of the deterioration is the supply of reactive nitrogen (N). To counteract the ongoing deterioration, it is necessary to understand the relationships between external N inputs via the atmosphere and fertilization, internal N turnover in the soil, plant uptake and growth, as well as possible links to the conservation degree of this habitat type. The overall objective of this dissertation is therefore to contribute to a better process-based understanding of the complete N cycle of Fauna-Flora-Habitat (FFH) meadows. 2. MATERIAL & METHODS. The interdisciplinary structure of this thesis includes different approaches to study inputs, turnover and outputs of N. With respect to N input via the airborne pathway, the focus was primarily placed on the hitherto poorly studied relationships between ammonia concentration and specific N-sensitive species groups in FFH lowland hay meadows. These relations were analyzed by means of generalized mixed models (GLM) based on nationwide data. In addition, further site-specific factors with a significant influence on the conservation degree of FFH meadows were identified using GLM. For the quantification of soil-borne N turnover processes, an empirical approach was chosen, including the determination of gross N turnover rates using the 15N isotope dilution method. To record these N dynamics, an intensive monitoring of gross and net N fluxes (mineralization, nitrification, ammonium consumption, nitrate consumption) in soils from different primary substrate and with different meadow conservation degree was carried out in 2016 and 2017. The results were merged using a process-based agroecosystem model (EXPERT-N), which was adjusted for habitat type 6510 to the collected data. The adapted model was applied to other sites of habitat type 6510 distributed throughout the state of Baden-Württemberg, which served to investigate spatial and temporal patterns of relevant nitrogen fluxes over an extended time period (1996 until 2012) and had been characterized in terms of soil and vegetation. 3. RESULTS. The nationwide data show a statistically significant decrease of habitat-typical low-nutrient indicator species and an increase of N indicator species with increasing atmospheric ammonia concentration on lowland hay meadows in Baden-Württemberg. Whether this is an effect of the atmospheric ammonia concentration or whether differences in agricultural land use structure play the decisive role could not be clarified with the available data. The intensive monitoring on selected FFH lowland hay meadows showed that soil-borne gross nitrification rates on soils from calcareous parent substrate (high pH) differed significantly from those from decalcified substrate (low pH). Both gross mineralization and gross nitrification were characterized by high temporal variability at all sites, which could not be explained by measurements of soil temperature and soil water content. Determination of net N turnover rates showed almost no variability and could not be used to draw conclusions about actual gross turnover rates in soil. The N-turnover model adapted for habitat type 6510 was able to represent spatial and temporal patterns over an extensive period of time. Simulation results showed high spatial and temporal variability for most N cycle variables. Soil organic N mineralization has a critical influence on the amount of plant-available N and thus has a direct impact on yield and N removal. On high clay-content soils and sites with high organic matter content, the model overestimated mineralization. External N inputs, such as moderate organic fertilization or atmospheric N deposition, were less crucial for yield. Additional N input is always a driving factor for N turnover in soil in the short term. With already high turnover levels, N turnover continues to increase and thus the risk of nutrient imbalances also increases. In the long term, the decisive factor for the N balance of FFH lowland hay meadows is whether N supply exceeds removal, whether the mineralizable organic N pools are thus increased, or whether a balance between supply and removal can be achieved. If soil internal N turnover is high, as it was the case on most of the simulated sites, a longer depletion phase should be applied before. In summary, this dissertation provides insight into the complexity of N cycling of FFH meadows. Using various approaches (statistical analyses, field trials, process-based modelling), it contributes to a better understanding of site-specific N turnover and the role of external N sources for the development of this ecosystem.
Biochar amendment for C sequestration in a temperate agroecosystem : implications for microbial C- and N-cycling
(2018) Bamminger, Chris; Kandeler, Ellen
Climate warming will have great impact on terrestrial ecosystems. Different soil properties such as temperature and moisture will be altered, thereby influencing C- and N-cycles, microbial activity as well as plant growth. This may contribute to the observed increase in soil greenhouse gas (GHG) emissions under climate change. Therefore, new options are needed to mitigate theses projected consequences. Biochar is primarily suggested to be effective in long-term C sequestration in agricultural soils due to its long-term stability. In addition, it could be applied to improve various soil properties, plant growth and to reduce soil GHG emissions. To date, knowledge about such beneficial biochar effects in soil under predicted warming climate is extremely scarce. In the first study, a slow-pyrolysis biochar from Miscanthus x giganteus feedstock (600 °C, 30 Min.) was incubated for short time (37d) under controlled laboratory conditions in agricultural soil in the presence of earthworms and N-rich litter (Phacelia tanacetifolia Benth.). Biochar increased microbial abundances and the fungal-to-bacterial PLFA ratio after 37 days in arable soil applied with litter suggesting improved living conditions for microorganisms with biochar. Fungi may benefit most from newly created habitats due to colonizable biochar pores and surfaces. Additionally, fungi could have also mineralized small amounts of recalcitrant biochar-C during plant litter decomposition. Without litter, biochar led to interactions between earthworms and soil microorganisms resulting in enhanced bacterial and fungal abundances. This indicates better growth habitats for soil microbes in earthworm casts containing biochar. Soil respiration and metabolic quotients (qCO2) and N2O emissions (in litter treatments) were decreased after biochar application suggesting a more efficient microbial community and underscoring the GHG mitigation potential of the used biochar. The field experiment, investigated in the second and third study, focused on the stability and long-term soil C sequestration potential of comparable Miscanthus biochar (850 °C, 30 Min.). Related effects on soil GHG emissions, physical, chemical and microbiological soil properties as well as plant growth were determined in an agroecosystem at year-round elevated soil temperature (+2.5 °C, since 2008). The second study investigated the short-term effects of biochar on microbial abundances and growth of winter rapeseed during the first year after field application to a warmed temperate arable soil. It was found that fungal biomass and the fungal-to-bacterial ratio were increased in the warmed biochar plots only after three months in the presence of spring barley litter from the previous growing season. The disappearance of this effect points to an overall high stability of the investigated biochar. Moreover, biochar proved to be effective in mitigating negative effects of seasonal dryness on microbial abundances and early plant growth in the dry spring period in 2014. However, biochar had no effect on final aboveground biomass of winter rapeseed at harvest in the first growing season. As shown in the third study, after two vegetation periods of winter rapeseed and spring wheat, the assumption that plant productivity in already fertile temperate arable soils is unlikely to be further enhanced with biochar amendment, was confirmed. Total CO2 emissions after two years were not reduced by biochar and remained unchanged even under warming suggesting a high degradation stability of the used biochar. N2O emissions were increased in biochar-amended soil at elevated soil temperature, presumably due to enhanced water and fertilizer retention with biochar. By using the global warming potential (GWP100) of total soil GHG emissions, the storage of biochar-C in soil was estimated to compensate warming-induced elevated soil GHG emissions for 20 years. To conclude, this thesis revealed that biochar may have only minor influence on soil microorganisms and crop growth in temperate, fertile arable field soils. However, it was shown that biochar could be a valuable tool for C sequestration in temperate arable soils, thus potentially offsetting a warming-induced increase in GHG emissions. In order to face climate change impacts, more long-term studies on microbiological effects and the C sequestration potential of biochar in cultivated soil under warming are urgently needed.
Biological regulation of subsoil C-cycling
(2019) Preußer, Sebastian; Kandeler, Ellen
Soils are the largest terrestrial reservoir of organic carbon (OC). Substantial proportions of the stored OC are found in stabilized form in deeper soil layers. Beside the quality and quantity of C input from plant biomass, C storage in soil is primarily controlled by the microbial decomposition capacity. Various physical, chemical and biological factors (e.g., substrate availability, temperature, water content, pH, texture) vary within soil profiles and directly or indirectly influence the abundance, composition and activity of microbial communities and thus the microbial C turnover. While soil microbiological research has so far focused mainly on processes in topsoil, the mechanisms of C storage and turnover in subsoil are largely unknown. The objective of the present thesis was therefore to investigate the specific influence of substrate availability and different environmental factors as well as their interactions on microbial communities and their regulatory function in subsoil C-cycling. This objective was addressed in three studies. In the first and second study, one-year field experiments were established in which microbial communities from different soil depths were exposed to altered habitat conditions to identify crucial factors influencing the spatial and temporal development of microbial abundance and substrate utilization within soil profiles. This was achieved by reciprocal translocation of soils between subsoil horizons (first study) and topsoil and subsoil horizons (second study) in combination with addition of 13C-labelled substrates and different sampling dates. In the third study, a flow cascade experiment with soil columns from topsoil and subsoil horizons and soil minerals (goethite) coated with 13C-labelled organic matter (OM) was established. This laboratory experiment investigated the importance of exchange processes of OM with reactive soil minerals for the quality and quantity of dissolved OM and the influence of these soil micro-habitats on microbial abundance and community composition with increasing soil depth. In the first study, the reciprocal translocation of subsoils from different soil depths revealed that due to comparable micro-climatic conditions and soil textures within the subsoil profile, no changes in microbial biomass, community composition and activity occurred. Moreover, increasing microbial substrate utilization in relation to the quantity of added substrate indicated that deep soil layers exhibit high potential for microbial C turnover. However, this potential was constrained by low soil moisture in interplay with the coarse soil texture and the resulting micro-scale fragmentation of the subsoil environment. The bacterial substrate utilization was more affected by this spatial separation between microorganisms and potentially available substrate than that of fungi, which was further confirmed by the translocation experiment with topsoil and subsoil in the second study. While the absolute substrate utilization capacity of bacteria decreased from the more moist topsoil to the drier subsoil, fungi were able to increase their substrate utilization and thus to partially compensate the decrease in C input from other sources. Furthermore, the addition of root litter as a preferential C source of fungal decomposer communities led to a pronounced fungal growth in subsoil. The third study demonstrated the high importance of reactive soil minerals both in topsoil and in subsoil for microbial growth due to extensive exchange processes of OM and the associated high availability of labile C. In particular copiotrophic bacteria such as Betaproteobacteria benefited from the increased C availability under non-limiting water conditions leading to a pronounced increase in bacterial dominance in the microbial communities of these soil micro-habitats. In conclusion, this thesis showed that subsoil exhibits great potential for both bacterial and fungal C turnover, albeit this potential is limited by various factors. This thesis, however, allowed to determine the specific effects of these factors on bacteria and fungi and their function in subsoil C-cycling and thus to identify those factors of critical importance. The micro-climate in subsoil, in particular soil moisture, was the primary factor limiting bacterial growth and activity, whereas fungi were more strongly restricted by substrate limitations.
Community Structure and Activity of Nitrate-Reducing Microorganisms in Soils under Global Climate Change
(2006) Deiglmayr, Kathrin; Kandeler, Ellen
Since the beginning of the Industrial Revolution, atmospheric carbon dioxide concentrations have been steadily increasing and, thus, contributed to a warming of the climate and altered biogeochemical cycles. To study the response of soil microorganisms to altered environmental conditions under global climate change, the nitrate-reducing community was regarded as a model community in the present thesis. This functional group, which performs the first step in the denitrification pathway, was selected because it is phylogenetically very diverse. In particular rising levels of atmospheric carbon dioxide as the most important catalyst of temperature rise and the retreat of glaciers in the Alps as one of the most evident consequences of climate change were investigated. The behaviour of nitrate reducers was investigated in a biphasic approach: (i) at the level of its enzyme activity of the nitrate reductase and (ii) at the level of community structure, which was characterised by RFLP (Restriction Fragment Length Polymorphism)-fingerprints using the functional gene narG. The effect of elevated atmospheric carbon dioxide concentrations on nitrate-reducing micro-organisms was studied in the Swiss FACE (Free Air Carbon dioxide Enrichment) experiment including the rhizosphere of two functional plant types (Lolium perenne and Trifolium repens), two N fertilisation levels and two sampling dates (June and October 2002). Whereas in June no significant treatment effect was observed, the nitrate reductase activity proved to be significantly reduced under elevated atmospheric carbon dioxide at the autumn sampling date. Simultaneously, elevated enzyme activities were recorded under Trifolium repens and high N fertilisation pointing to a control of nitrate reductase activity by nitrate availability at the time of sampling. The community structure of nitrate reducers, however, showed a different response pattern with sampling date and the strongly varying pH of the different experimental plots constituting the main driving factors. With respect to the three experimental factors atmospheric carbon dioxide, plant type and N fertilisation the composition of the nitrate reducers revealed a high stability. The microbial succession of nitrate-reducing microorganisms was studied in the rhizosphere of Poa alpina across the glacier foreland of the Rotmoosferner/Oetz valley. Sampling was performed in August and at the end of the short period of vegetation in September. The nitrate reductase activity increased significantly with progressing successional age, whereas organic carbon together with nitrate concentrations in the soils explained the major part of this effect. The microbial community of nitrate reducers revealed a significant shift across the glacier foreland, with pH and organic carbon representing the most important environmental factors inducing this shift. A detailed analysis of the clone libraries that were constructed for the youngest and the oldest site in the glacier foreland pointed to the tendency of lower diversity in the late succession compared to the young succession. Possibly an increasing selective pressure due to higher densities of microorganisms and, hence, a higher competition for limited resources contributed to the decline in diversity. In conclusion, the functional group of nitrate reducers responded to changing environmental conditions under global climate change particularly through altered enzyme activities. The amount and the direction of this response depended strongly on the nitrate availability and the organic carbon content in soils. The community structure of nitrate-reducing microorganisms, however, proved to be resilient towards short-term substrate fluctuations. This indicates that the genetic pool of this group of soil microorganisms possesses a high functional stability characterized by a relatively persistent composition and an independent modulation of enzyme activity.
Constraints on microbial pesticide degradation in soils
(2023) Wirsching, Johannes; Kandeler, Ellen
Pesticides are an essential component of intensified agriculture and have contributed significantly to the increase in food production observed in recent decades. Since 1960, pesticide use has increased by a factor of fifteen to twenty, representing a market value of $40 billion in 2016. Soil monitoring campaigns to track pesticide contamination of croplands across Europe are quantifying pesticide residues whose residence times in soils exceed expected values. Diffuse contamination by pesticide residues raises concerns about soil functions, soil biodiversity, and food safety, as well as the transport of contaminants by wind and water to surface waters or to adjacent, organically managed croplands. Data on the frequency of occurrence and concentrations of pesticide residues in soil demonstrate a discrepancy between the determination of persistence and subsequent approval and their actual fate in soil. This raises the question of whether degradability of individual organic compounds has been adequately studied. Microbiological degradation is the most important process for reducing pesticide loads in soils. A reliable estimate of pesticide residence time requires an expanded understanding of the factors limiting microbial degradation. Degradation of anthropogenic organic chemicals in soils occurs much more slowly than would be expected based on their physicochemical properties. While processes that determine the fate of pesticides in soil have often been studied at different spatial and temporal scales, reasons for discrepancies between the observed complete degradation of pesticides under laboratory conditions and their persistence in the field remain unclear. This thesis addresses this challenge by focusing on the central question of why inherently biodegradable compounds in soils display increased persistence under field conditions. Organic contaminants in low but detectable and environmentally significant concentrations could remain in the soil once available concentrations fall below a threshold where bioenergetic growth restrictions come into play. In addition, potential microbial and biophysical limitations and environmental factors such as soil temperature and soil moisture are often examined separately in current degradation studies. Combinations of temperature and soil moisture changes associated with different concentration levels have been less well examined, resulting in an incomplete understanding of the degradation process. Another key factor in the demonstrated discrepancy between predicted and actual persistence in the field could be due to laboratory experiments that cannot account for field-scale processes. Therefore, degradation rates determined in laboratory experiments cannot be confidently extrapolated to the field scale. . This thesis identified further important regulatory mechanisms for microbially mediated pesticide degradation. The previously unknown concentration-dependent degradation dynamics and the concentration-dependent influence of limiting environmental conditions on microbial degradation emphasize the importance of studies using a realistic concentration range. Evidence of deep transport of a highly sorptive pesticide such as glyphosate primarily via preferential flow pathways into the subsoil with lower degradation dynamics underscores the need to include processes that can only be verified in field studies as part of risk assessments. The results of this thesis suggest that the biodegradation rates of pesticides are not homogeneous at field scales and may account in part for the discrepancy between complete degradation of pesticides under laboratory conditions and their persistence in the field. Laboratory studies in which soil samples are pooled and mixed to obtain a single "representative" sample can provide a simplified understanding of the process, but the complexity, particularly that of soil heterogeneity, of pesticide distribution and microbial degradation associated with prevailing climatic conditions, requires calibration of previously used methods in field studies and possibly at landscape, watershed, or regional scales. The scale-dependent degradation aspect will become even more important in the future; as soil properties and processes that control the toxicological aspects of contaminants include temperature and moisture, and changes associated with climate change will lead to an increase in extreme precipitation, longer dry periods, and soil erosion.
Do agricultural advisory services in Europe have the capacity to support the transition to healthy soils?
(2022) Ingram, Julie; Mills, Jane; Black, Jasmine E.; Chivers, Charlotte-Anne; Aznar-Sánchez, José A.; Elsen, Annemie; Frac, Magdalena; López-Felices, Belén; Mayer-Gruner, Paula; Skaalsveen, Kamilla; Stolte, Jannes; Tits, Mia
The need to provide appropriate information, technical advice and facilitation to support farmers in transitioning towards healthy soils is increasingly clear, and the role of the Agricultural Advisory Services (AAS) in this is critical. However, the transformation of AAS (plurality, commercialisation, fragmentation, decentralisation) brings new challenges for delivering advice to support soil health management. This paper asks: To what extent do agricultural advisory services have the capacity to support the transition to healthy soils across Europe? Using the ‘best fit’ framework, analytical characteristics of the AAS relevant to the research question (governance structures, management, organisational and individual capacities) were identified. Analysis of 18 semi-structured expert interviews across 6 case study countries in Europe, selected to represent a range of contexts, was undertaken. Capacities to provide soil health management (SHM) advice are constrained by funding arrangements, limited adviser training and professional development, adviser motivations and professional cultures, all determined by institutional conditions. This has resulted in a narrowing down of access and content of soil advice and a reduced capacity to support the transition in farming to healthy soils. The extent to which emerging policy and market drivers incentivise enhanced capacities in AAS is an important area for future research.
Ecosystemic Effect Indicators to assess Effects of agricultural Landuse on Ecosystems
(2000) Merkle, Andrea Hildegard; Kaupenjohann, Martin
Agricultural production and its material and non-material emissions may cause side-effects in ecosystems. These effects have to be assessed and evaluated. The aim of the present study is to provide a tool that relates emissions of agricultural production and affected ecosystems. This tool represents an indicator approach. The needed indicators are defined as ecosystemic effect indicators (EEI). Within the study a multistage procedure is developed which should be pursued in identifying indicators. To assess which emissions must be regarded in detail an estimation of relevance by means of an emission and input classification preceeds the indicator development. Subsequently, EEI are developed for the relevant emissions and inputs. The derivation of EEI is carried out by the following steps: 1) One starts top-down at the target 'maintaining the ecosystem functioning' in this work depicted by the utility functions. A list with characteristics that are dependent on hierarchical levels is compiled for each relevant function. 2) Starting at one specific input a list of potential receptors is compiled bottom-up. These represent potential effect indicators. 3) By overlapping the lists of the steps 1 and 2 one yields EEI specific for the utility function and the input under consideration. The step 3 is performed by means of expert knowledge. The advantage of the indicator approach is its operativeness which is site-independent. The results of the study show that EEI may be deemed to be promising tools to picture human influences in particular of agricultural production on ecosystems. The results of the case study provide the basis to assess effects on ecosystems for some major stressors. In cases where critical values are available site specific quantitative statements concerning ecological effects within the frame of sustainable agriculture are enabled by the present method for the derivation of indicators. Subsequently, necessary measures can be deduced
Effect of reduced nitrogen deposition on microbial activity, abundance and diversity in forest soils
(2012) Enowashu, Esther Eneckeh; Kandeler, Ellen
The deposition of nitrogen has increased many-fold due to anthropogenic activities. Since forest ecosystems are often limited by N availability, elevated N inputs from the atmosphere can have a fertilization effect but in the long-term, excess N can influence above- and below-ground production. One of the consequences of N deposition and increased N inputs is a shift in microbial community structure and function as ecosystems move towards N saturation. Soil microorganisms through the action of enzymes play an important role in N dynamics. Thus, the availability and turnover of N depends strongly on microbial abundance, diversity and activity which are in turn influenced by soil properties. Studies on the effects of high nitrogen inputs and the response of forest ecosystems to nitrogen saturation are many and well understood. However, the reversibility of N-induced shifts in forest ecosystem processes is largely unknown. This thesis was therefore designed to study the response of soil microorganisms to reduced N deposition. A biphasic approach was employed to look into (i) the general microbial functional status of the Solling forest site as well as (ii) the microbial community structure which may be a key regulator of two important processes of N transformation: denitrification and proteolysis. The goal of the present thesis was addressed in three studies. Denitrification is considered sensitive to environmental changes and the response of nitrate-reducers and denitrifiers to reduced N deposition was determined in the first study. The goal of the second study was to investigate the overall microbial activity of the Solling forest profiles especially focussing on enzymes involved in the N cycle. This revealed a pronounced activity of peptidases whereby a set of novel pepN primers encoding alanine aminopeptidase enzyme was designed in the third study to determine the group of bacteria involved in proteolysis in forest as well as agricultural and grassland soils. The Solling experimental station was established more than two decades ago and it gave the opportunity to study the N cycle in a natural forest ecosystem at different sampling dates and depths. A combination of classical biological methods and modern molecular techniques were used in the studies. Soil physico-chemical parameters (OC, Nt, NO3-, NH4+, pH, % Water content) were analysed to gain more information on mineralization and immobilization of N in the soil profiles. The analysis of microbial biomass, ergosterol content and the activity of several enzymes of the N, C and P cycles as well as enzyme activity of nitrate reducers was determined in order to interpret microbial functions. The abundance of nitrate reducers and denitrifiers were determined by quantitative PCR of 16S rRNA, nitrate reductase (narG and napA) and denitrification (nirK, nirS and nosZ) genes. The diversity of peptide degrading bacteria was analysed by PCR, cloning and sequencing and the construction of pepN gene libraries. The results of the first study indicated that time and space were the main drivers influencing the abundance and activity of the nitrate reducers and denitrifier communities in the forest soil profiles. Reduced N deposition had a of minimal effect. Interestingly, the ratios of nosZ to16S rRNA gene and nosZ to nirK increased with soil depth thereby tempting to conclude that the size of denitriﬁers capable of reducing N2O into N2 might be bigger in the mineral horizons. In the second study, a stronger response of N cycling enzymes to reduced N deposition could be seen. However, these responses especially that of specific peptidases differed in magnitude which could be indicative of a modification of the reaction rates of the different N cycling enzymes. Correlation of nutrients (N, C, P) with microbial biomass and enzyme activities in the soil profiles revealed that substrate availability was the main factor influencing microbial activity. In the third study, analyses of gene libraries from extracted DNA from forest, agricultural and glacier soil samples revealed a high diversity of pepN sequences related to mainly α-Proteobacteria. A majority of the sequences showed similarity to published data revealing that the amplified region of pepN might be conserved. Linking diversity and enzymatic data, lowest diversity was observed in the agricultural soil where activity levels of alanine aminopeptidase were lowest indicating the importance of diversity studies for ecosystem functioning. In conclusion, this thesis offers valuable contributions to understanding the impact of N deposition. The approach used was suitable to assess the response of the different microbial communities to reduced N deposition. The magnitude of the response depended strongly on space, time and substrate availability in soils as well as their interactions.
Effectiveness of bio-effectors on maize, wheat and tomato performance and phosphorus acquisition from greenhouse to field scales in Europe and Israel: a meta-analysis
(2024) Nkebiwe, Peteh Mehdi; Stevens Lekfeldt, Jonas D.; Symanczik, Sarah; Thonar, Cécile; Mäder, Paul; Bar-Tal, Asher; Halpern, Moshe; Biró, Borbala; Bradáčová, Klára; Caniullan, Pedro C.; Choudhary, Krishna K.; Cozzolino, Vincenza; Di Stasio, Emilio; Dobczinski, Stefan; Geistlinger, Joerg; Lüthi, Angelika; Gómez-Muñoz, Beatriz; Kandeler, Ellen; Kolberg, Flora; Kotroczó, Zsolt; Kulhanek, Martin; Mercl, Filip; Tamir, Guy; Moradtalab, Narges; Piccolo, Alessandro; Maggio, Albino; Nassal, Dinah; Szalai, Magdolna Zita; Juhos, Katalin; Fora, Ciprian G.; Florea, Andreea; Poşta, Gheorghe; Lauer, Karl Fritz; Toth, Brigitta; Tlustoš, Pavel; Mpanga, Isaac K.; Weber, Nino; Weinmann, Markus; Yermiyahu, Uri; Magid, Jakob; Müller, Torsten; Neumann, Günter; Ludewig, Uwe; de Neergaard, Andreas
Biostimulants (Bio-effectors, BEs) comprise plant growth-promoting microorganisms and active natural substances that promote plant nutrient-acquisition, stress resilience, growth, crop quality and yield. Unfortunately, the effectiveness of BEs, particularly under field conditions, appears highly variable and poorly quantified. Using random model meta-analyses tools, we summarize the effects of 107 BE treatments on the performance of major crops, mainly conducted within the EU-funded project BIOFECTOR with a focus on phosphorus (P) nutrition, over five years. Our analyses comprised 94 controlled pot and 47 field experiments under different geoclimatic conditions, with variable stress levels across European countries and Israel. The results show an average growth/yield increase by 9.3% (n=945), with substantial differences between crops (tomato > maize > wheat) and growth conditions (controlled nursery + field (Seed germination and nursery under controlled conditions and young plants transplanted to the field) > controlled > field). Average crop growth responses were independent of BE type, P fertilizer type, soil pH and plant-available soil P (water-P, Olsen-P or Calcium acetate lactate-P). BE effectiveness profited from manure and other organic fertilizers, increasing soil pH and presence of abiotic stresses (cold, drought/heat or salinity). Systematic meta-studies based on published literature commonly face the inherent problem of publication bias where the most suspected form is the selective publication of statistically significant results. In this meta-analysis, however, the results obtained from all experiments within the project are included. Therefore, it is free of publication bias. In contrast to reviews of published literature, our unique study design is based on a common standardized protocol which applies to all experiments conducted within the project to reduce sources of variability. Based on data of crop growth, yield and P acquisition, we conclude that application of BEs can save fertilizer resources in the future, but the efficiency of BE application depends on cropping systems and environments.
Effects of elevated soil temperature and altered precipitation patterns on N-cycling and production of N2O and CO2 in an agricultural soil
(2016) Latt, Yadana Khin; Kandeler, Ellen
Both temperature and precipitation regimes are expected to change with climate change and are, at the same time, major environmental factors regulating biogeochemical cycles in terrestrial ecosystems. Therefore, crop water availability, soil nitrogen transformations, losses, and uptake by plants as well as CO2 emissions from soil are likely to be changed by climate change. Agriculture is known to be one of the most important human activities for releasing significant amounts of N2O and CO2 to the atmosphere. Due to global concern about the changing climate, there has been a great interest in reducing emissions of N2O and CO2 from agricultural soils. CO2 and N2O are produced in soil primarily by microbial processes. Their production and emissions from the soil are controlled by a number of environmental variables including inorganic N availability, soil temperature and water content. Agricultural management practices, such as irrigation, affect these environmental variables and thus have the potential to dramatically alter N2O and CO2 emissions from the soil. The present study is titled "Effects of elevated soil temperature and altered precipitation patterns on N cycling and production of N2O and CO2 in an agricultural soil". The objectives of this study were: to determine the effects of elevated soil temperature on N cycling in a winter wheat cropping system, to investigate the short-term response of N2O and CO2 fluxes during rewetting of soils after extended dry periods in summer, and to determine the effects of different degrees of rewetting on the CO2 emission peaks after rewetting in laboratory incubations. In the 1st experiment, we used the Hohenheim Climate Change (HoCC) experiment in Stuttgart, Germany, to test the hypothesis that elevated soil temperature will increase microbial N cycling, plant N uptake and wheat growth. In the HoCC experiment, soil temperature is elevated by 2.5°C at 4 cm depth. This experiment was conducted at non-roofed plots (1m x 1m) with ambient (Ta) and elevated (Te) soil temperature and with ambient precipitation. In 2012, winter wheat (Triticum aestivum) was planted. C and N concentrations in soil and aboveground plant fractions, soil microbial biomass C and N (Cmic and Nmic), mineral N content (NH4+ - N and NO3- - N), potential nitrification and enzymes involved in nitrogen cycling were analyzed at soil depths of 0-15 and 15-30 cm at five sampling dates. The plants were rated weekly for their phenological development and senescence behavior. We found that an increase in soil temperature by 2.5oC did not have a persistent effect on mineral N content and the activity of potential nitrification within the soil. Plant growth development also did not respond to increased soil temperature. However microbial biomass C and N, and some enzyme activities involved in N-cycling, tended to increase under elevated soil temperature. Overall, the results of this study suggested that soil warming by 2.5oC slightly stimulates soil N cycling but does not alter plant growth development. In the 2nd experiment, in 2013, the effects of a change in the amount and frequency of precipitation patterns on N2O and CO2 emissions were studied after the two dry periods in summer in the HoCC experiment. N2O and CO2 gas samples were taken from four subplots (1m x 1m) of each roofed plot exposed to ambient (Ta) or elevated (Te) soil temperature and four precipitation manipulations (ambient plot, reduced precipitation amount, reduced precipitation frequency, and reduced precipitation amount and frequency). We found that CO2 emissions were affected only by temperature, but not by precipitation pattern. It can be said that N2O and CO2 emissions after rewetting of dry soil were not altered by changing precipitation patterns during dry periods in summer. In the year 2014, using laboratory incubations, we also measured the short-term response of CO2 production to a rewetting of dry soil to different volumetric water contents for 24 hours. This study was conducted by manipulating microcosms with agricultural soil from the HoCC experimental site, which had been exposed to severe drought conditions of three months duration for each of the last six years. The results showed that CO2 production increased with increases in the water content of soils by rewetting at 5%, 15%, 25%, 35% and 45% VWC. With increasing water additions more peaks in CO2 production were detected and different temporal patterns of CO2 emission were affected by adding different amounts of water. It might be due to the fact that with greater water additions successively larger pore sizes were water filled and therefore different bacterial groups located in different pore size classes might have contributed to CO2 production. In summary, the results from field study suggested that climate warming will affect N cycling in soils in an agricultural cropping system. The results from both field and microcosm rewetting experiments contribute to a better understanding of C and N dynamics in soil by investigating the effect of varying soil water content on the emission of N2O and CO2.
Effects of farmland conversion to orchard or agroforestry on soil organic carbon fractions in an arid desert oasis area
(2022) Wang, Weixia; Ingwersen, Joachim; Yang, Guang; Wang, Zhenxi; Alimu, Aliya
In southern Xinjiang province, northwest China, farmland is undergoing rapid conversion to orchards or agroforestry. This has improved land-use efficiency but has also caused drastic ecological changes in this region. This study investigated the effects of farmland conversion to orchard or agroforestry on soil total organic carbon (TOC) and several soil labile fractions: readily oxidizable carbon (ROC), light fraction organic carbon (LFOC), and dissolved organic carbon (DOC). Soil samples were collected from seven cropping treatments: a monocultured wheat field (Mono), a 5-year-old jujube orchard (5 J), a 5-year-old jujube/wheat alley cropping system (5 JW), a 10-year-old jujube orchard (10 J), a 10-year-old jujube/wheat alley cropping system (10 JW), a 15-year-old jujube orchard (15 J), and a 15-year-old jujube/wheat alley cropping system (15 JW). The results show that the ROC concentrations varied from 0.17 ± 0.09 g/kg to 2.35 ± 0.05 g/kg across all land-use types and soil depths studied. It was higher in the 0–10 cm and 10–20 cm layers of treatment 10 JW than in other treatments and significantly greater than in the Mono treatment. The highest value of DOC was reached at 593.04 mg/kg in the 15 JW treatment at 0–10 cm. Labile organic carbon decreased with increasing depth in all treatments. The proportion of ROC and LFOC to TOC decreased with increasing soil depth. In all treatments, the ratio of DOC to TOC generally decreased initially and then increased again with increasing depth. Correlation analysis showed that ROC, LFOC, and DOC were closely correlated with TOC (p < 0.01). The ROC, LFOC, and DOC concentrations were significantly correlated with each other (p < 0.01). Following conversion of farmland to jujube orchard or agroforestry, the content and activity of soil organic carbon tended to increase due to augmentation of plant residues. Thus, jujube orchards and agroforestry systems are effective methods to restore soil organic carbon.
Effects of resource availability and quality on soil microorganisms and their carbon assimilation
(2014) Kramer, Susanne; Kandeler, Ellen
Soil microorganisms play a pivotal role in decomposition processes and therefore influence nutrient cycling and ecosystem function. Availability and quality of resources determines activity, growth and identity of substrate users. In agricultural systems, availability of resources is dependent on, for example, crop type, management, season, and depth. At depth substrate availability and microbial biomass decrease. However, there remain gaps in our understanding of C turnover in subsoil and how processes in the topsoil may influence abundance, activity, and function of microorganisms in deeper soil layers. With respect to substrate quality it is thought that bacteria are the dominant users of high quality substrates and more labile components whereas fungi are more important for the degradation of low quality and more recalcitrant substrates (i.e. cellulose, lignin). Therefore, this thesis was designed to increase our understanding of C turnover and the influence of both availability and quality of substrates on microorganisms in an agricultural soil. In the first and second studies, a recently established C3-C4 plant exchange field experiment was used to investigate the C flow from belowground (root) and aboveground (shoot litter) resources into the belowground food web. Maize plants were cultivated to introduce a C4 signal into the soil both by plant growth (belowground / root channel) and also by applying shoot litter (aboveground litter channel). To separate C flow from the shoot litter versus the root channel, maize litter was applied on wheat cultivated plots, while on half of the maize planted plots no maize litter was returned. Wheat cultivated plots without additional maize litter application served as a reference for the calculation of incorporated maize-C into different soil pools. Soil samplings took place in two consecutive years in summer, autumn and winter. Three depths were considered (0-10 cm: topsoil, 40-50 cm: rooted zone beneath the plough layer, 60-70 cm: unrooted zone). In the third study a microcosm experiment with substrates of different recalcitrance and complexity was carried out to identify primary decomposers of different plant litter materials (leaves and roots) during early stages of decomposition (duration of 32 days) and to follow the C flow into the next higher trophic level (protozoa).
Fate of microbial carbon derived from biogas residues applied to arable soil
(2015) Coban, Halil; Kandeler, Ellen
Soil organic matter (SOM) is the major determinant of soil fertility as it has a number of positive impacts such as improving soil physical parameters, providing nutrients for crops, and supplying energy for the microbial biomass activity in soil. Loss of organic matter is a soil threat observed worldwide. Also, bioenergy crop cultivation may accelerate SOM loss due to higher biomass harvesting compared to food crops. It is necessary to supply adequate organic matter input to arable soils in order to maintain sustainable food and biofuel production. Biogas residues (BGRs), the side-products of biogas production, are rich in microbial and plant biomass; they thus can be used as a soil conditioner and contribute to replenishing the carbon (C) pool in soil. However, our knowledge on the contribution of BGRs particularly the microbial residues present in it to SOM formation is limited, even though scientific interest on SOM formation via microbial inputs is growing. Therefore, the objective of this thesis were i) developing an approach to label microbial biomass of biogas residues, ii) tracing the fate of labelled BGRs in arable soil, iii) determining the C flux within microbial food web, and iv) determining the impacts of other soil conditioners on the mineralization of BGRs. In the first study a method was developed to label the autotrophic microorganisms in a biogas reactor using KH13CO3-amended cow manure as substrate. Analyses of phospholipid fatty acids (PLFA) and ether lipids confirmed the successful labelling of microorganisms, especially Gram-positive bacteria and methanogenic archaea. After removal of unused labelled carbonates by an acid fumigation approach, the labelled BGRs were incubated in soil for 378 days. The fate of 13C was traced in CO2 and in bulk soil with a mass balance having 93% mean recovery. Results showed that about 40% of the C derived from BGRs was rapidly mineralized within the first seven days, and mineralization reached 65% at the end of experiment. The data could be fitted to a two-pool exponential degradation model assuming two C pools each decaying exponentially. The proportions of readily degrading and stable C pools were determined to be 51% and 49%, respectively, with half-lives of 3 days and 1.9 years, respectively. The long half-life of the stable C pool in BGRs may indicate a mid-term contribution to SOM. In addition, the mineralization of SOM was enhanced by BGR-application, i.e. priming effects were detected, thus their extensive application should be avoided. A differential fatty acid approach was used in the second study for the separation of C input from BGRs to living biomass and non-living SOM. Phospholipid fatty acids (PLFA) as indicators of living biomass were compared with total fatty acids (t-FA), which are found also in necromass. Using PLFA as biomarkers of specific microbial groups, C redistribution within the microbial food web was determined. Results showed that BGRs increased the microbial biomass in soil. The sum of 13C-labelled PLFA and t-FA decreased during incubation to 60% and to 33%, respectively. The level of enrichment was different for the individual PLFA and indicated that Gram-negative bacteria were predating on Gram-positive bacteria. A contribution of ether lipids was also detected indicating C flow from decaying methanogens. This study confirmed that microbial biomass in BGRs applied to arable soil significantly contributes to SOM formation. After determining the fate of microbial C derived from BGRs in arable soil, the impacts of other soil conditioners on the mineralization of BGRs were tested in the third study. For this, labelled BGRs were incubated in soil both alone and together with compost, biochar and untreated manure. The amount of C mineralized to CO2 and the degradation rate constant of stable C pool were not affected by any of the co-amendments. However, manure resulted in a higher mineralization rate constant of the readily degrading C pool. C flow within microbial food web was from Gram-positive bacteria and methanogenic archaea to mainly Gram-negative bacteria and slightly to fungi in all treatments. This study showed that co-amending BGRs with other soil conditioners brings neither benefits nor harms in terms of the formation or the mineralization of soil organic matter. The proposed labelling approach using KH13CO3 may be useful for tracing the fate of BGRs. The enrichment in both bacteria and archaea were sufficient to be measured in an incubation experiment lasting for more than one year. However, there are disadvantages of the proposed approach such as presence of highly enriched residual carbonates. The fumigation method should be optimized for a complete removal of the highly labelled residual carbonates which will increase the precision of the overall approach.
Formation and properties of inorganic Si-contaminant compounds
(2023) Stein, Mathias; Rennert, Thilo
Environmental contamination is the most pressing issue of our global society. Among others, contamination with potentially toxic elements (PTEs) such as cadmium (Cd), copper (Cu), and lead (Pb) threatens organisms, humans, and entire ecosystems. Silicon (Si) is known to benefit the resilience to such abiotic stresses and its application showed to alleviate PTE toxicity. These beneficial effects are predominantly attributed to in planta processes, but PTE immobilization in soil induced by Si addition has also been reported. However, interactions between silicic acid and Cd, Cu, and Pb at undersaturation of their silicates and other mineral phases remains elusive. Silicic acid, which is dissolved Si, may interact with cationic PTEs in soil, altering their environmental fate. At oversaturation, PTEs and silicic acid may precipitate forming metal silicates, whereas at undersaturation PTEs may be incorporated into the network of polymerized silicic acid or inner-spherically complexed on the negatively charged surface of polymeric silicic acid, forming particulate Si-contaminant compounds. Aiming to elucidate the extent and the mechanism of the potential PTE immobilization, long-term formation experiments in aqueous solution, a soil column experiment, and batch adsorption experiments including isothermal titration calorimetry (ITC) experiments were conducted. Long-term formation experiments in aqueous solution were conducted at undersaturation of PTE silicates and other mineral phases. Time-dependent particle size and charge changes were measured in between 211 days using dynamic light scattering and phase analysis light scattering. Solid phases were characterized by Fourier transform infrared (FTIR) spectroscopy and 29Si nuclear magnetic resonance (NMR) spectroscopy. Particle size measurements revealed a positive effect of cationic PTEs on silicic acid polymerization (Cu>Cd>Pb). However, only traces (2.1‰ Cd, 2‰ Cu and 1.4‰ Pb of the initially added PTEs) were bound during the polymerization of silicic acid. Copper was incorporated in the polymeric network of silicic acid during its polymerization as indicated by FTIR spectra and 29Si NMR relaxation experiments. Cadmium was only outer-spherically adsorbed. The long-term formation experiments revealed that particulate compounds form due to silicic acid/PTE interactions at undersaturation of other mineral phases. Soil column experiments were conducted to investigate the formation of Si-contaminant compounds in an acidic soil (pH 4.6). Therefore, a Haplic Phaeozem was preconditioned with Cu and Cd in the absence and presence of additional monomeric silicic acid and subsequently irrigated with artificial rainwater. Interactions of silicic acid and PTEs were investigated by monitoring the elemental composition of the eluates, and the size and charge of the particles eluted. After irrigation, total and exchangeable Si and PTE contents were analysed. Silicic acid application resulted in larger particles in the eluates, indicating silicic acid polymerization. The molar metal:Si ratios of the eluates and the significant correlation between Si and exchangeable metals indicated that particularly Cu formed Si-contaminant compounds in the soil, enhancing its retention. However, translocation of PTEs in particulate form, associated with polymerized silicic acid, was indicated. The negative charge and the very small size of the formed compounds may facilitate translocation from soil into groundwater. Batch adsorption experiments and ITC experiments were conducted to examine mechanism and extent of PTE adsorption to polymeric silicic acid. These experiments did not reveal any adsorption of the metals on polymeric silicic acid at pH 4 to 6 and after 24 h, which was underpinned by the results of the ITC experiments. However, zeta-potential measurements indicated weak electrostatic interactions between the negatively charged silanol groups and the PTEs. These electrostatic interactions may be the initial step of Si-contaminant compound formation. This thesis elucidates extent and mechanisms of silicic acid, either mono- or polymeric, and PTE interactions, showing the formation of particulate compounds from the reaction between silicic acid and cationic PTEs in aqueous solution and in an acidic soil. Particularly Cu formed stable compounds during silicic acid polymerization. However, the interactions showed a low extent and mainly weak electrostatic interactions, concluding that the addition of monomeric silicic acid to acidic soils may not be a quantitatively effective measure to reduce PTE mobility in soils. Aggregation effects, resulting from freezing/thawing or drying/rewetting, however, could alter the mobility of Si-contaminant compounds. These effects may be subject of future research, as well as the spectroscopic detection of Si-contaminant compounds in soils.
Formation of mineral‐associated organic matter in temperate soils is primarily controlled by mineral type and modified by land use and management intensity
(2023) Bramble, De Shorn E.; Ulrich, Susanne; Schöning, Ingo; Mikutta, Robert; Brandt, Luise; Poll, Christian; Kandeler, Ellen; Mikutta, Christian; Konrad, Alexander; Siemens, Jan; Yang, Yang; Polle, Andrea; Schall, Peter; Ammer, Christian; Kaiser, Klaus; Schrumpf, Marion
Formation of mineral-associated organic matter (MAOM) supports the accumulation and stabilization of carbon (C) in soil, and thus, is a key factor in the global C cycle. Little is known about the interplay of mineral type, land use and management intensity in MAOM formation, especially on subdecadal time scales. We exposed mineral containers with goethite or illite, the most abundant iron oxide and phyllosilicate clay in temperate soils, for 5 years in topsoils of 150 forest and 150 grassland sites in three regions across Germany. Results show that irrespective of land use and management intensity, more C accumulated on goethite than illite (on average 0.23 ± 0.10 and 0.06 ± 0.03 mg m−2 mineral surface respectively). Carbon accumulation across regions was consistently higher in coniferous forests than in deciduous forests and grasslands. Structural equation models further showed that thinning and harvesting reduced MAOM formation in forests. Formation of MAOM in grasslands was not affected by grazing. Fertilization had opposite effects on MAOM formation, with the positive effect being mediated by enhanced plant productivity and the negative effect by reduced plant species richness. This highlights the caveat of applying fertilizers as a strategy to increase soil C stocks in temperate grasslands. Overall, we demonstrate that the rate and amount of MAOM formation in soil is primarily driven by mineral type, and can be modulated by land use and management intensity even on subdecadal time scales. Our results suggest that temperate soils dominated by oxides have a higher capacity to accumulate and store C than those dominated by phyllosilicate clays, even under circumneutral pH conditions. Therefore, adopting land use and management practices that increase C inputs into oxide-rich soils that are under their capacity to store C may offer great potential to enhance near-term soil C sequestration.
Function and composition of the soil microbial community in calcareous grassland exposed to elevated atmospheric carbon dioxide
(2003) Ebersberger, Diana; Kandeler, Ellen
Terrestrial ecosystems generally respond to rising atmospheric carbon dioxide (CO2) concentrations with increased net primary productivity and increased water use efficiency. This may change the amount and quality of organic substances entering the soil and fuelling microbial metabolism. Soil microorganisms and their activity might also be affected by increased soil moisture at elevated CO2. This thesis was designed to analyse the response of the soil microbial community in a species-rich calcareous grassland in the Swiss Jura Mountains, which had been exposed to ambient and elevated CO2 concentrations (365 and 600 ppm) for six growing seasons. In the first study, laboratory incubation experiments were conducted to explore the relationship between litter quality under elevated carbon dioxide and enzymes involved in carbon cycling. Naturally senescent, mixed litter from the long-term field experiment was incubated with soil material for 10, 30 and 60 days. Soil samples were then obtained close to the litter layer using a microtome cutting device. Litter and soil samples were analysed for invertase and xylanase activity. The lower litter quality produced under elevated CO2, i.e. wider C/N ratio, yielded lower invertase and xylanase activities of litter. Litter addition stimulated activities in adjacent soil. Invertase activities of adjacent soil were not affected by litter quality, while soil xylanase activity was higher in soil compartments adjacent to litter from elevated CO2 plots. The reduced enzyme activities of litter produced under elevated CO2 can slow decomposition, at least during the initial stages. Since the effects of litter quality on enzyme activities in adjacent soil were small, we conclude that CO2-induced belowground C-inputs (e.g. increased root mass) and altered moisture conditions are more important controls of enzyme activities than altered litter quality. In the second study, functional diversity of the soil microbial community was assessed by analysing N-mineralisation and activities of enzymes of the C-, N-, P- and S-cycle of soil samples taken in spring and summer 1999, in the 6th season of CO2 exposure. In spring, N-mineralisation increased significantly by 30% at elevated CO2, while there was no significant difference between treatments in summer. The response of soil enzymes to CO2 enrichment was also more pronounced in spring, when alkaline phosphatase and urease activities were increased most strongly, by 32% and 21%, respectively. In summer, activity differences between CO2 treatments were greatest in the case of urease and protease (+21% and +17% at elevated CO2). The significant stimulation of N-mineralisation and enzyme activities at elevated CO2 was probably caused by higher soil moisture and/or increased root biomass. In the third study, soil microbial community structure of soil samples taken in spring and summer 1999 was analysed by means of PLFA profiles and 16S rDNA fingerprints obtained by PCR-DGGE. PLFA profiles were not affected by elevated CO2. Ordination analysis of DNA fingerprints revealed a significant relation between CO2 enrichment and variation in DNA fingerprints. This variation must be attributed to low intensity bands because dominant bands did not differ between treatments. Diversity of the bacterial community (number of bands in DNA fingerprints and Shannon indices) was not affected. The observed minute, but significant changes in the structure of the soil bacterial community might be caused by changes in the quality of rhizodeposits at elevated CO2. These could either result from altered rhizodeposition of individual plants or from altered species composition of the calcareous grassland.The 4th part of the thesis compiles data on soil microorganisms, soil fauna, soil structure and nitrogen cycle of calcareous grassland after CO2 exposure for six growing seasons. Microbial biomass, soil basal respiration and the metabolic quotient were not altered significantly. PLFA analysis revealed no significant shift in the ratio of fungi to bacteria. Protozoans, bacterivorous and fungivorous nematodes, acarians, collembolans, and root-feeding nematodes were not affected by elevated CO2. Total nematode numbers averaged slightly lower (-16%) and nematode mass was significantly reduced (by 43%) due to fewer large-diameter nematodes classified as omnivorous and predacious. CO2 exposure resulted in a shift towards smaller aggregate sizes; this was caused by higher soil moisture. Reduced aggregate sizes result in reduced pore neck diameters. This can confine the locomotion of large-diameter nematodes and possibly accounts for their decrease. The CO2 enrichment also affected the nitrogen cycle. N stocks in living plants and surface litter increased, but N in soil organic matter and microorganisms remained unaltered. N mineralisation increased considerably, but microbial N did not differ between treatments, indicating that net N immobilization rates were unaltered.
Gamma-ray spectrometry as auxiliary information for soil mapping and its application in research for development
(2019) Reinhardt, Nadja; Hermann, Ludger
Sustainable yield increase is desperately needed for enhancing global food security, in particular, in Sub-Saharan Africa. There population growth and resulting land degradation accompany with extreme weather events. As a consequence, famines frequently occur. For planning result-oriented agricultural research for development (R4D) like in the Trans-Sec project (www.trans-sec.org), in which this thesis was embedded, local environmental, as well as social realities must be taken into account prior to any cropping experiment. Only this way, cost-efficient and adapted solutions for local subsistence farmers, but also conclusive outcomes for researchers, can be obtained. For this purpose, methods that work quick and cost-efficient are a prerequisite. In this respect, gamma-ray spectrometry as rapid soil survey method is reviewed in the first part of this thesis. Soil or geological exploration are easily accomplishable, in either airborne (with helicopters, airplanes or drones) or proximal (stationary or on-the-go) surveys. Gamma decays of the naturally occurring isotopes 40-potassium (40K), 238-uranium (238U) and 232-thorium (232Th) that appear in sufficient amounts and decay energies for field measurements are counted per time. The counts are then transferred to the respective element contents. Water and soil organic matter attenuate gamma signals, on one hand hampering signal interpretation, on the other hand indirectly enabling soil water content and peat mappings. Gamma-ray signatures of soils depend on (1) mineral composition of the bedrock, as well as (2) weathering intensity and related soil forming processes, that, in turn, influence the environmental fate of 40K, 238U and 232Th. Hence, due to soil formation heterogeneity at the landscape scale, resulting gamma signatures are locally specific and make soils readily distinguishable. In two villages in central Tanzania, participatory soil mapping in combination with gamma-ray spectrometry served as rapid and reliable approach to map local soils for later cropping experiments. Local farmers indicated major soil types on satellite images of the village area, which were the basis for further mapping steps. Fingerprint gamma-ray signatures of reference soil profiles were collected. Subsequent gamma-ray surveys on transect walks accelerated soil unit delineation for the final soil map. Challenges were misunderstandings related to language issues, variable soil knowledge of individual farmers and erosion leading to staggered soil profiles and non-distinctive signatures in some places. The combination of indigenous knowledge and gamma-ray spectrometry, nevertheless, led to a quick overview of the study area and made laboratory soil analyses largely redundant. The gained gamma-ray signal information were further statistically evaluated. For this purpose, distinction of major local soil types via K/Th ratios were graphically and statistically tested. The results showed that gamma-ray spectrometry is a sound method to distinguish certain local clay illuviation soil types by their K/Th ratios. The last part of the thesis covers the Trans-SEC approach of testing innovations for sustainable agricultural yield increase. Pearl millet (Pennisetum glaucum (L.) R.Br.) as the typical staple food in the study region was used as example crop. The process was scientist-led but local farmers selected the innovations that they considered adequate to their needs. Tied ridging for enhancing the water storage and placed fertilizer for increasing fertilizer efficiency was offered for their choice. Transferability of results from on-station experiments and demonstration plots in the village to farmers plots and trans-disciplinary issues are discussed. The number of factors that influence the result, as well as data insecurity increased with every level of spatial aggregation (on-station, demonstration plot and on-farm plots in the village). Soil type, position of the plot in the landscape (lateral water flow, distance to homesteads and, hence, fertility status) were the major influencing factors. In particular, the data insecurity related to on-farm trials due to low control intensity suggests to only conduct such experiments if large numbers of replicates (large N-trials) are feasible in future approaches. In conlusion, the thesis shows, that local knowledge combined with modern science is beneficial for agricultural R4D projects. Shortcomings within the transdisciplinary experimental approaches are pointed out. In particular, with respect to knowledge gained from the linkage of local experience and scientific approaches, there is still high potential. For this purpose, social and applied natural sciences should both strive for more interdisciplinary collaboration.

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