Institut für Tropische Agrarwissenschaften (Hans-Ruthenberg-Institut)

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A study of pasture cropping as an alternative cropping system for sub-saharan Africa
(2020) Orford, Rohan; Asch, Folkard
With food security and soil degradation being a major concern and hurdle in the development goals of sub-Saharan Africa (SSA), there has been and continues to be an attempt to find an alternative cropping system to conventional monocropping that rehabilitates soils whilst increasing productivity and efficiency of the subsistence cropping system. Such a cropping system needs to be realistically adoptable within the SSA social and ecological constraints. An alternative Australian winter rainfall relay cropping system coined pasture cropping (PaCr) was identified as an option that may surmount some of these limitations.This research involved completing a field trial through to model scale introductory assessment of the water dynamics in PaCr and the implications thereof in yield, water use efficiency (WUE) and competition for water; ultimately assessing the potential of PaCr in SSA. PaCr was adapted to an intercropping system for SSA summer rainfall conditions. The three treatments included the representative subsistence crop cowpea (Vigna unguiculate) and a common indigenous pasture (Eragrostis curvula) and an additive PaCr setup of cowpea directly seeded into pasture in water limited (rainfed) field trials in Pretoria, South Africa between 2013-2015. The DM yields of PaCr were 17% and 293% higher in both seasons compared to the conventional cowpea monocrop yield. When comparing PaCr yield to conventional pasture, there was a 12% and 89% higher yield in both seasons compared to the conventional pasture monocrop yield. The greater yield advantage in 2015 with the limited rainfall indicates that PaCr was most advantageous in terms of DM yield in a drier year which is a time of greatest risk and food insecurity. PaCr was also more WUE in both seasons, being significantly higher than the cowpea monocrop in 2015. Competition also showed a higher degree of competitiveness by cowpea in the wetter 2013-14 season and lower competitive ability in the drier 2015, whereas pasture showed little competitive response in 2013-14 and attaining significantly higher yields than the monocrop in 2015. The results of the field trials were used to adapt the University of Pretoria’s Soil Water Balance (SWBsci) crop model to simulate an intercropping system. Observed field results were compared to simulated results and statistical goodness of fit indicators were assessed, concluding that with all the variations of season and systems, the results were acceptable as an inaugural adaptation of the Soil Water Balance model. Other relevant crop water use parameters were extrapolated from the simulated data allowing for a more complete insight into the field trials. With the adapted SWBsci model, 14-year simulations were run in three different climates and on three different soil types for all three cropping systems to map out the viability of PaCr across an aridity index continuum as a reference for further application in research or in industry and to stress test SWBsci. Results demonstrated that PaCr was only advantageous in dry sub-humid to humid conditions on clay-loam to sandy soils, whereas pasture was dominant in more semi-arid conditions on the three different soils. Cowpea only performed better on clay soils in dry-sub humid to sub humid conditions. These advantages are attributed to differing plant water availability at various root depths suiting growth and/or competition of either one or both crops. These plant water availability differences were determined by water holding capacity of various soil types and rainfall volumes. From a WUE perspective, the pasture and PaCr did have a higher WUE but with the extreme variation in rainfall there was no significant difference. But pasture and PaCr both had a very high WUE in arid to semi-arid conditions due to the deeper roots of pasture accessing stored soil water. Competition also showed insignificant results due to the variation in the rainfall. However, in more arid to semi-arid conditions on clay-loam and sand competition outweighed facilitation thus resulting in land equivalent ratios (LER) of below 1, whereas on clay for the same aridity levels the average LER was greater than one. This was attributed to cowpea have a better competitive ability when clay water holding capacity confined plant available water to the top soil layers. The converse is true in the dry sub-humid conditions and wetter conditions because LER was less than one on clay soils while being greater than one on clay-loam and sand. This was attributed to the lower water holding capacity of sand spreading the plant available water through the profile allowing for niche root partitioning to be effective. For subsistence farmers, PaCr out-yielded the cowpea monocrop in arid conditions on all three soil types and on clay in semi-arid conditions. In the wetter dry sub-humid conditions, PaCr out-yielded cowpea on sand. In the wet sub-humid conditions PaCr does well on clay-loam and sand, but cowpea yields under these conditions are more than adequate to make the choice of PaCr debatable form a yield point of view. However, if soil rehabilitation is a necessity in the sub-humid areas, this makes PaCr a very realistic option.
Atmospheric and soil water deficit induced changes in chemical and hydraulic signals in wheat (Triticum aestivum L.)
(2022) Tatar, Özgür; Brück, Holger; Asch, Folkard
Plant responses to soil drying and the metabolic basis of drought‐induced limitations in stomatal opening are still being discussed. In this study, we investigate the roles of root‐born chemical and hydraulic signals on stomatal regulation in wheat genotypes as affected by soil drought and vapour pressure deficit. Twelve consecutive pot experiments were carried out in a glasshouse. Two bread wheat cultivars (Gönen and Basribey) were subjected to drought under high and low vapour pressure deficit (VPD) in a growth chamber. Total dry matter, specific leaf area, xylem ABA content, xylem osmotic potential, xylem pH, root water potential (RWP), stomatal conductance, leaf ABA content and photosynthetic activity were determined daily during 6 days after the onset of treatments (DAT). In the first phase of drought stress, soil drying induced an increase in the xylem ABA with a peak 3 DAT while RWP drastically decreased during the same period. Then the osmotic potential of leaves decreased and leaf ABA content increased 4 DAT. A similar peak was observed for stomatal conductance during the early stress phase, and it became stable and significantly higher than in well‐watered conditions especially in high vapour deficit conditions (H‐VPD). Furthermore, xylem pH and xylem osmotic potential appeared to be mostly associated with atmospheric moisture content than soil water availability. The results are discussed regarding possible drought adaptation of wheat under different atmospheric humidity.
Chamber‐based system for measuring whole‐plant transpiration dynamics
(2022) Pieters, Alejandro; Giese, Marcus; Schmierer, Marc; Johnson, Kristian; Asch, Folkard
Most of our insights on whole‐plant transpiration (E) are based on leaf‐chamber measurements using water vapor porometers, IRGAs, or flux measurements. Gravimetric methods are integrative, accurate, and a clear differentiation between evaporation and E can be made. Water vapor pressure deficit (VPD) is the driving force for E but assessing its impact has been evasive, due to confounding effects of other climate drivers. We developed a chamber‐based gravimetric method, in which whole plant response of E to VPD could be assessed, while keeping other environmental parameters at predetermined values. Stable VPD values (0.5–3.7 kPa) were attained within 5 min after changing flow settings and maintained for at least 45 min. Species differing in life form and photosynthetic metabolism were used. Typical runs covering the range of VPDs lasted up to 4 h, preventing acclimation responses or soilborne water deficit. Species‐specific responses of E to VPD could be identified, as well as differences in leaf conductance. The combined gravimetric‐chamber‐based system presented overcomes several limitations of previous gravimetric set ups in terms of replicability, time, and elucidation of the impact of specific environmental drivers on E, filling a methodological gap and widening our phenotyping capabilities.
Drought affects the synchrony of aboveground and belowground phenology in tropical potato
(2023) Hoelle, Julia; Khan, Awais; Asch, Folkard
The literature describes the belowground and aboveground phenology of potato to be linearly related. Bud formation is synchronous with tuber initiation and flowering with tuber filling. Many agronomic and breeding studies on potato use non‐destructive aboveground phenology to assess belowground development. No information is currently available on the influence of water deficit on the synchrony of above‐ and belowground development in potato. Five contrasting potato genotypes were subjected to four irrigation treatments on two different soil types. The irrigation treatments were as follows: fully watered, early drought, intermediate drought, and late drought. In 5‐day intervals after withholding water, detailed belowground and aboveground development was recorded. Results showed that the synchrony between aboveground and belowground development is strongly influenced by both water deficit and development stage at drought initiation. Under early drought, the aboveground development was hastened and belowground development was delayed. The opposite was found in later development stages. The earlier the drought was initiated, the longer the tuber filling phase was, while the bulking phase was shortened. We concluded that under terminal drought conditions aboveground development and belowground development need to be evaluated separately and cannot follow the standard evaluation system that uses aboveground phenology as a proxy for tuber formation belowground development rates.
Effects of endophytic Bacillus spp. on accumulation and distribution of iron in the shoots of lowland rice grown under iron toxic conditions
(2023) Weinand, Tanja; Asch, Julia; Asch, Folkard
Background: The tolerance of plants against abiotic stresses can be greatly influenced by their interaction with microbes. In lowland rice (Oryza sativa) production, the iron toxicity of the soils constitutes a major constraint. Although there are tolerant cultivars, the mechanisms underlying the tolerance against excess iron are not fully understood. Even less is known about the role of microbes in the response to iron toxicity. Aim: In the study presented here, the effects of different Bacillus isolates on the accumulation and distribution of iron within the shoots of different rice cultivars grown under iron toxicity were analyzed. Methods: Three lowland rice cultivars with contrasting tolerance to iron toxicity (IR31785-58-1-2-3-3, Sahel 108, Suakoko 8) were inoculated with three Bacillus isolates (two B. pumilus and one B. megaterium) and, after 1 week, exposed to excess iron (1,000 ppm) for 8 days. Tolerance was evaluated by leaf symptom scoring. Results: Bacterial inoculation mitigated leaf symptoms in the sensitive cultivar IR31785-58-1-2-3-3 despite no significant differences in shoot iron concentration between inoculated and noninoculated plants. In the tolerant excluder cultivar, Suakoko 8, leaf symptoms were exacerbated when inoculated with B. pumilus Ni9MO12. While the total shoot Fe concentration was not affected in this bacteria × cultivar combination, the distribution of iron within the shoot was clearly disturbed. Tolerance to iron toxicity of the tolerant includer cultivar, Sahel 108, was not affected by Bacillus inoculation. Conclusion: In conclusion, our results show that Bacillus inoculation can affect the tolerance of lowland rice to iron toxicity and that the effects strongly depend on the bacteria × cultivar combination.
Effects of salinity and alternate wetting and drying irrigation on genotypic performance of lowland rice in the Vietnamese Mekong Delta
(2023) Johnson, Kristian Philip; Asch, Folkard
Rice production in the Vietnamese Mekong Delta (VMD) is threatened by climate change. Predicted changes in the seasonal distribution of precipitation patterns along with higher temperatures increase the risk of severe drought during the winter-spring cropping season (the dry season). The resulting decrease in discharge of the Mekong River coupled with sea level rise, means sea water can intrude deep into the Mekong Delta during the dry season, such as during the dry season of 2016. Rice production is both victim and culprit, as it is a significant source of greenhouse gas (GHG) emissions, mainly methane (CH₄). The objective of my thesis was to show how rice production, from the level of plant to system, can become more resilient to drought and salinity, while also increasing its sustainability by reducing its emission of methane. The effect of the water saving irrigation technology, alternate wetting and drying (AWD), in combination with varieties commonly grown in VMD, was investigated in a two-year field experiment conducted during the dry season in the VMD. We measured water use, yield, yield components, phenology, as well as greenhouse gas emissions of methane and nitrous oxide (N₂O). Whereas the effect of salinity on growth of the same varieties from the field experiment was tested in a greenhouse experiment at the University of Hohenheim, Germany. We were able to show the efficacy of genotype selection and AWD in reducing methane emissions, mitigating the impact of severe dry seasons, and salinity intrusion in the VMD. Our findings could also be applied to other Asian Mega-Deltas.
Effects of temperature and vapor pressure deficit on genotypic responses to nitrogen nutrition and weed competition in lowland rice
(2021) Vu, Duy Hoang; Asch, Folkard
Since rice is the major food for more than half of the world’s population, rice production and productivity have significant implications for food security. In adaptation to increasing water scarcity, as well as to reduce greenhouse gas emissions, water-saving irrigation measures (e.g., alternate wetting and drying – AWD) have been introduced in many rice growing regions. Previous studies have shown that AWD increases water use efficiency and reduces methane (CH4) emissions, while grain yield remains equal or is slightly increased compared to continuous flooding. However, the absence of a ponded water layer in formerly flooded rice fields creates new challenges, such as altered root zone temperature (RZT), enhanced nitrification leading to higher nitrate (NO3-) concentrations in the soil, or stimulated weed germination leading to changes in weed flora. All these factors may affect nutrient uptake and assimilation of rice plants and thus plant growth. Further, vapor pressure deficit (VPD) drives transpiration and water flux through plants, so nutrient uptake and assimilation by plants may be subject to adjustment under varying VPD conditions. As VPD varies largely between rice growing regions and seasons, and is also predicted to continuously increase under global warming, it was included as a factor in this study. The overall objective of the study was to evaluate the response of different rice varieties to arising challenges under water-saving irrigation. Experiments were conducted in the greenhouse and VPD chambers at the University of Hohenheim, where plants were grown in hydroponics. Both during day and night, nutrient uptake rates of rice increased linearly with RZT in the observed temperature range up to 29°C, implying that the optimum temperature for nutrient uptake of rice must be above 29°C. However, the uptake rates of different nutrient elements responded differently to RZT, with the increase in nitrogen (N) uptake per °C being greater than that of phosphorus (PO43-) and potassium (K+), which can potentially lead to an imbalance in plant nutrition. Therefore, the increase in RZT either due to climate change or water management may call for an adjusted fertilizer management. In general, the increase in nutrient uptake per °C was more pronounced during the day than during the night, while the amino acid concentration in the leaves both during the day and night was positively correlated with N uptake during the day, suggesting that plants may benefit more from increased temperature during the day. When both ammonium (NH4+) and NO3- were supplied, rice plants took up a higher share of NH4+. However, after depletion of NH4+ in the nutrient solution, plants took up NO3- without decreasing the total N uptake. The N form taken up by the rice plant had no effect on leaf gas exchange at low VPD, whereas NO3- uptake and assimilation increased stomatal conductance in some rice varieties at high VPD, resulting in a significantly higher photosynthetic rate. However, the increase in photosynthesis did not always result in an increase in dry matter, probably due to a higher energy requirement for NO3- assimilation than for NH4+. The effect of N form on leaf gas exchange of some rice varieties was only found at high VPD, indicating genotype-specific adaptation strategies to high VPD. However, maintenance of high stomatal conductance at high VPD will only be beneficial at sufficient levels of water supply. Therefore, we hypothesize that with increasing VPD, intensified nitrification under water-saving irrigation may improve leaf gas exchange of rice plants, provided a careful choice of variety and good water management. Furthermore, N form had an effect on the competition between rice and weeds. In mixed culture with rice, a large share of NO3- increased the growth and competitiveness of upland weeds but reduced the growth and competitiveness of lowland weeds. Consequently, enhanced nitrification under AWD may reduce the competitive pressure of lowland weeds, but increase the competition of upland weeds. In contrast to rice, growth of the upland weed was not reduced by high VPD, while its nutrient uptake was correlated with water uptake, suggesting that upland weeds will more successfully compete with rice for nutrients as VPD increases. Selection of rice varieties better adapted to NO3- uptake will improve rice growth and its competitiveness against weeds under AWD. The cumulative effects of RZT and soil nitrification on rice growth should be considered when evaluating the effects of climate change on rice growth.
Evaluating topsoil salinity via geophysical methods in rice production systems in the Vietnam Mekong Delta
(2023) Nguyen, Van Hong; Germer, Jörn; Asch, Folkard
The Vietnam Mekong Delta (VMD) is threatened by increasing saltwater intrusion due to diminishing freshwater availability, land subsidence, and climate change induced sea level rise. Through irrigation, saltwater can accumulate in the rice fields and decrease rice production. The study aims at evaluating topsoil salinity and examining a potential link between topsoil salinity and rice production systems in a case study in the Tra Vinh province of the VMD. For this, we applied two geophysical methods, namely, 3D electrical resistivity tomography (ARES II) and electromagnetic induction (EM38‐MK2). 3D ARES II measurements with different electrode spacings were compared with EM38‐MK2 topsoil measurements to evaluate their respective potential for monitoring topsoil salinity on an agricultural scale and the relationship between land‐use types and topsoil salinity. Results show that EM38‐MK2 is a rapid and powerful tool for obtaining high‐resolution topsoil salinity maps for rice fields. With ARES II data, 3D maps up to 40 m depth can be created, but compared with EM38‐MK2 topsoil maps, topsoil salinity was underestimated due to limitations in resolution. Salt contamination of above 300 mS m−1 was found in some double‐cropped rice fields, whereas in triple‐cropped rice fields salinity was below 200 mS m−1. Results clearly show a relation between topsoil salinity and proximity to the saline water sources; however, a clear link between rice production and topsoil salinity could not be established. The study proved that geophysical methods are useful tools for assessing and monitoring topsoil salinity at agricultural fields scale in the VMD.
Evaluation of geo-physics methods to study the effects of land use on salinity in rice production systems in the Vietnam Mekong Delta
(2023) Nguyen, Van Hong; Asch, Folkard
In the Vietnam Mekong Delta (VMD), salinity is a major concern for rice production, which is highly susceptible to saltwater intrusion due to its proximity to the sea and tidal influences. Climate change induced sea level rise, reduced upstream freshwater flows and land subsidence are exacerbating the problem. As a result, saltwater intrudes into the rivers, canals and aquifers of the VMD, reducing the availability of freshwater for irrigation and agricultural use. As the worlds largest rice exporter, the impacts of salinity on rice production in the VMD is significant and poses a serious threat to food security. Addressing the impact of salinity on rice production in the VMD requires a comprehensive approach to assess salinity from the topsoil to the subsoil layers. Therefore, this study was conducted to evaluate salinity issues in rice production systems and figure out the link between rice production systems in the VMD and salinity by applying geophysical methods. Geophysical methods were used in this study including Electromagnetic Induction (EMI) and Electrical Resistivity Tomography (ERT). EMI measures electrical conductivity, while ERT measures electrical resistivity, which is the inverse of conductivity and is closely related to soil salinity. ERT was employed to assess salinity of the subsurface to a depth of 40 m, while EMI was used to detect topsoil salinity up to 1.5 m depth. The case study, Tra Vinh province, in the VMD was chosen for the soil salinity investigation. Soil salinity measurement was conducted during dry season in different land-use types related to rice production systems in the VMD. The field measurements were carried out in two consecutive dry seasons, the dry season of 2019-2020 and dry season of 2020-2021. The first measurement was carried out at five case study sites with different cropping patterns to validate the ERT data and to compare the two methods to determine the best method for investigating soil salinity. Five boreholes were drilled to a depth of 40 m to validate the ERT measurement for subsurface salinity. In the following dry season, ERT and EMI were measured in the extensive survey, with the measurement sites selected along four typical geological transects in the Tra Vinh province. With a desire to use ERT alone to assess soil salinity, ERT data was then used to predict topsoil salinity along with EMI measurement. However, the results from ERT measurement seems to underestimated topsoil salinity due to the lack of measurement on the fields compared to the EMI. The conductivity data collected from different land use types, showed that double rice crop fields are the most prone to salinity than other cropping patterns such as, triple rice, triple/double rice, and single rice. In general, however, topsoil salinity is not a critical issue in the study area compared to potential salinity from the near surface water table, which varies from a relatively shallow depths, from 2 m to 5 m depth, identified by ERT using a resistivity of less than 3 Ωm as the threshold for saline water. The saline water table is the Tra Vinh province increase with the proximity to the sea. As analyzing from resistivity maps, saltwater intrudes the subsurface groundwater from two directions: rivers along the province, and from the sea. Therefore, the double rice, single rice fields and small area of triple rice fields distributed along the two main rivers in the Tra Vinh province are highly affected by saline subsurface water. From the results we see that salinity affect land use in rice production system, and not another way round. Furthermore, we would like to prove for the first time the capability of ERT and EMI in evaluating soil salinity in the rice cultivation fields in the VMD. In addition, we suggested the powerful methods to capture and monitor saltwater intrusion into the rice fields from top to subsurface, which is necessary to improve and protect rice production.
Genotype specific responses to Bacillus spp. inoculation in lowland rice (Oryza sativa L.) under iron toxicity
(2023) Weinand, Tanja; Asch, Folkard
Amidst a growing global population, limited arable land, and higher pressure from both abiotic and biotic stressors in a shifting climate, there is a need for enhancing yields through sustainable agricultural practices, and new, more tolerant cultivars. In recent decades, employing microbial inoculants as biofertilizers and biopesticides has gained growing popularity. Yield reductions ranging from 16-78%, and sometimes complete crop failure, can occur in in lowland rice cultivation systems where high iron concentrations in the soil solution lead to excess iron uptake by the plants. Twenty to 60% of the rice growing area of sub-Saharan Africa is affected by iron toxicity. Development of iron-tolerant cultivars has lagged, largely due to gaps in understanding the genotypic adaptation mechanisms to this stress. Furthermore, effects of the microbiome on such stress responses are often overlooked. Although there have been previous reports on growth promoting effects of bacteria inoculation in lowland rice under iron toxicity, these studies were focused on plant growth promotion and mineral nutrient uptake. The primary aim of this dissertation was to assess the effects of Bacillus spp. inoculation on different lowland rice cultivars under iron toxicity, with emphasis on genotypic shoot tolerance strategies. Physiological, biochemical, and molecular mechanisms underlying genotypic responses to Bacillus inoculation were investigated and potential overlaps with responses to biotic stressors explored. Within the framework of this dissertation, three lowland rice cultivars, were inoculated with three Bacillus isolates (two B. pumilus isolates, one B. megaterium isolate) and exposed to 1000 ppm Fe2+ in the nutrient solution. The three cultivars were selected because they differ in their tolerance against iron toxicity, with one being sensitive, one a tolerant excluder (tolerance through minimizing iron uptake), and one a tolerant includer (tolerance of high iron concentrations in the plant). At day eight of stress exposure, the effects of Bacillus inoculation on tolerance against iron toxicity were evaluated by leaf symptom scoring. The effects of bacteria on the progression of leaf bronzing were then related to specific tolerance mechanisms, such as shoot iron content, iron allocation within the shoot, ROS scavenger enzyme activity, and the expression of genes related to iron toxicity tolerance. Furthermore, the effects of inoculation on brown spot disease development seven days after infection with Bipolaris oryzae were also assessed by leaf symptom scoring. All three Bacillus isolates were characterized for their ability to solubilize Zn and P, production of auxin, siderophores, and HCN, the presence of ACC deaminase activity, and in vitro inhibition of fungal growth. Effects of Bacillus inoculation on iron toxicity tolerance were found to depend on the cultivar x Bacillus isolate combination. While leaf symptom expression was ameliorated in the inoculated sensitive cultivar, the tolerant excluder cultivar generally developed stronger symptoms of iron toxicity when inoculated with Bacillus. No significant effects of Bacillus inoculation on the tolerance against iron toxicity were found in the tolerant includer cultivar. The beneficial outcomes of bacterial inoculation on plant stress tolerance are often credited to the bacteria's plant growth promoting properties. However, we did not find a clear association between plant growth and tolerance to iron toxicity. Furthermore, the Bacillus isolates did not display ACC deaminase activity nor the ability to solubilize Zn or P. Auxin production was only notable in B. megaterium, the isolate with least effects on both tolerance to iron toxicity and brown spot disease development. Siderophore production was found in B. pumilus D7.4 but only under low iron supply. Instead of plant growth, iron homeostasis as well as the interconnection between iron homeostasis and the immune response of lowland rice seem to be affected by bacterial inoculation. For the first time it was shown that Bacillus inoculation can directly affect tolerance against iron toxicity in lowland rice through inducing the production of ferritin in the young leaf blades of the sensitive cultivar. NO produced by B. pumilus Ni9MO12 is hypothesized to be involved in the signaling cascade leading to OsFER expression. Activity of ROS scavenger enzymes of the ascorbate-glutathione redox cycle were not affected by Bacillus inoculation in the leaf blades. In the tolerant excluder cultivar, an alteration in iron distribution within the shoot of B. pumilus Ni9MO12 inoculated plants, is assumed to cause the decline in tolerance. In conclusion, it was shown that Bacillus inoculation can influence iron toxicity tolerance in lowland rice. The results underline the significance of the interaction between rice genotypes and bacteria isolates. Furthermore, Bacillus inoculation did not promote plant growth, instead, distinct adaptation mechanisms within the shoot tissue were triggered to allow for increased tolerance of high iron concentrations in the leaves. The signaling cascades involved might be linked with biotic stress responses. Understanding such intricate mechanisms is vital for improving plant productivity. While inoculants composed of single microbial isolates may not meet the anticipated outcomes for practical application in sustainable agriculture, they offer a valuable laboratory tool for investigating genotypic plant tolerance to various abiotic and biotic stresses and the role of the microbiome within. New breeding approaches that consider genotypic traits essential for obtaining a beneficial microbiome might accelerate the creation of more tolerant cultivars.
Genotypic responses of rice to alternate wetting and drying irrigation in the Mekong Delta
(2023) Johnson, Kristian; Vo, Thuong Ti Bach; Van Nha, Duong; Asch, Folkard
In the Vietnamese Mekong Delta (VMD), alternate wetting and drying (AWD) in rice (Oryza sativa L.) production during the dry season has the potential to reduce greenhouse gas emission and freshwater use. However, its effect on yield compared with continuously flooded systems can vary. To evaluate the effect of AWD on yield and yield‐forming processes on genotypes commonly grown in the VMD, field trials over two consecutive dry seasons were conducted at the Loc Troi Group's agricultural research station in the VMD. We observed a significant yield reduction, 7% on average, across all varieties grown under AWD. Analysis of yield components showed that under AWD, genotypes on average produced more tillers, but fewer spikelets, suffered greater spikelet sterility and had a lower 1000 grain weight. The size of this effect differed between dry seasons. Accordingly, we were able to identify and characterize genotypes better suited to AWD. We also could relate shifts in sink‐source relationships to the overlap of drying events and key phenological stages other than flowering. Our study shows how successful implementation of AWD requires adaptation to both environment and genotype.
Greenhouse gas emissions from rice production in the Vietnamese Mekong River Delta as affected by varietal selection and water management
(2023) Vo, Thi Bach Thuong; Asch, Folkard
The topic of this dissertation deals with rice production, the predominant source of daily nourishment for more than half of the worlds population. Rice production is directly affected by global climate change through aggravating climatic conditions, but is also one of the major sources of greenhouse gases (GHG) in the agricultural sector. The latter aspect is investigated in 4 publications by assessing the factors contributing to emissions, the quantification of GHG emissions across different scales, and possible mitigation of GHG emissions. In totality, these studies aim at bridging the gap between field measurements to national extrapolations in view of both GHG inventories and future mitigation programs. In terms of methodologies, the publications compiled in the following chapters represent a broad spectrum ranging from field measurements to meta-analysis, but they all deal with the emission of methane (CH4) which is generated in rice fields due to the unique feature of ‘semi-aquatic’ soils. The publications based on newly conducted field measurements also a nitrous oxide (N2O) which is a potent GHG emitted typically emitted from rice fields in low quantities. Chapter 2 (Vo et al. 2018) compiles field measurements from the Vietnamese Mekong River Delta (MRD) which accounts for more than 50% of the country’s rice production. Emission factors (EFs) are used to estimate total emissions associated with the area of rice production. The Intergovernmental Panel on Climate Change (IPCC) has given the default EFs that are based on global averages as Tier 1 approach. However, the IPCC guidelines encourage national reporting institutions to conduct field measurements of GHG emissions and to determine country-specific EFs as the basis of the Tier 2 approach. Tier 2 further accounts for the fact that emissions may also be highly variable within a given country by requesting for disaggregation of EF at a sub-national scale. Therefore, the most recent GHG inventories for Vietnam are based on region-specific EFs under the IPCC Tier 2 approach, which is implemented using national activity data (i.e., national average cultivation period of rice and harvested area). In Chapter 2, we developed the specific EFs for different hydrological sub-zones and growing seasons in the MRD to achieve disaggregated EFs that could be used for the National Communications submitted to the United Nations Framework Convention on Climate Change (UNFCCC). Due to the distinct bio-physical condition and cropping cycle, the results show the lowest emissions in the saline sub-zone. While alluvial, acid sulfate soils had intermediate levels, the highest emissions were found in the deep flood sub-zone. In Chapter 3 (Vo e al. 2018), we expanded the geographical scope of the GHG assessment to the entire country. This meta-analysis of CH4 data covers 73 cropping seasons at 36 field sites across the rice-growing areas of Vietnam under the IPCC’s baseline conditions (i.e., continuously flooded, no organic amendments) in the three main cropping seasons. As an output of this study, a structured database contained the location and season of each measurement as well as site-specific bio-physical factors and crop management at the site scale. In the next step, we developed disaggregated EFs for different zones and cropping seasons across the country that can be used for future reporting commitments of Vietnam as part of a more accurate Tier 2 assessment. The calculated EFs were generally higher than the IPCC defaults and the values used for Vietnam’s 3rd National Communications for the North, Central, and South Vietnam. Chapter 4 (Vo et al. 2023) has to be seen in the context of Vietnam’s climate change policy that aims at reducing GHG emissions from rice production. Mitigation in rice production will be crucial for Vietnam because CH4 from rice accounts for about 15 % of the national GHG which is more than the entire transport sector even without considering CO2 and N2O emissions along the rice value chain. Previous studies have assessed the potential practices by changes in farming practices, namely water, nutrient, and straw management, and almost uniformly concluded that Alternate Wetting and Drying (AWD) is the most promising strategy for achieving a sizable mitigation of GHG emissions. Given the intense rainy season in southeast Asia, however, the precipitation is often too high to implement this water regime and will not provide any economic benefit from water saving. In turn, it is important to consider other mitigation strategies such as the selection of low-emitting cultivars. We conducted a field screening of 20 rice varieties that was expanded by assessing the interactive effect of variety selection and AWD. An experimental layout with 120 plots (based on 3 replicates) was required to assess this interaction of variety and water management in the field using the closed chamber method to collect air samples followed by lab analysis (using a gas chromatograph) to quantify the CH4 and N2O concentrations. The results of this study confirmed that GHG emissions from rice fields are dominated by CH4 emissions whereas N2O emissions were negligible. Compared with IPCC default values, the data set from two dry seasons yielded higher emissions under a baseline of continuous flooding (EF = 2.96 kg CH4 ha-1 d-1) and lower Scaling Factors (SF) of AWD (SF = 0.4). Chapter 5 (Asch et al. 2023) deals with the agronomic aspects of both AWD and variety selection and their implications on the economic viability of future mitigation efforts. While AWD is more efficient in reducing CH4 emissions than variety selection, this water management practice resulted in a slight yield decrease in our field study. Given the limited applicability of AWD, the selection of varieties is a much more adaptable approach and is also beneficial in terms of farmers’ adoption because it does not require any crop management changes. However, this strategy could also impact profits since the lowest-emitting variety may not have the highest rice yields. In the context of future mitigation programs in the MRD, the dry season allows good control of the water table, so AWD should be the core of any mitigation effort. Variety selection on the other hand should be targeted in those seasons and locations that do not allow draining the fields. In turn, low-emitting varieties should become an integral part of future mitigation programs to supplement AWD within a systematic out scaling. In terms of economic trade-offs for the farmers, we assumed a scenario with compensation derived from the still premature carbon markets. The potential profit increments are very low and not attractive if distributed to farmers directly, but may collectively be used for investments in rural development by government agencies for benefitting farmers indirectly, e.g. by improving the irrigation infrastructure.
Integrated land-use systems contribute to restoring water cycles in the Brazilian Cerrado biome
(2024) Glatzle, Sarah; de Almeida, Roberto Giolo; Pereira Barsotti, Mariana; Bungenstab, Davi José; Giese, Marcus; Macedo, Manuel Claudio M.; Stuerz, Sabine; Asch, Folkard
Cerrado, constituting native Brazilian vegetation in the tropical and subtropical grasslands, savannas, and shrublands biome, has been extensively replaced by crop and pastureland, resulting in reduced water recycling to the atmosphere via evapotranspiration (ET). Re-introducing trees via integrated land-use systems potentially restores soil health and water-related processes; however, field data are scarce. During two years, we monitored soil moisture dynamics of natural Cerrado (CER), continuous pasture (COP), integrated crop-livestock (ICL), and integrated crop-livestock-forestry (ICLF) systems across 100 cm soil depth. Across years, mean soil moisture was highest for ICL, followed by COP and lowest in systems with trees (ICLF and CER). However, seasonal and spatial analyses revealed pronounced differences between soil layers and systems. COP and ICL mainly lost water from upper soil layers, whereas in ICLF, the strongest water depletion was observed at 40–100 cm depth, almost reaching a permanent wilting point during the dry season. CER was driest in the upper 40 cm, but water storage was highest below 60 cm depth. Our results suggest that compared to conventional land-use practices, integrated systems, including trees, increase water recycling to the atmosphere via ET and potentially compensate for the loss of key ecological functions of degraded or replaced Cerrado.
Ion uptake and distribution in sweet potato genotypes subjected to salt stress is not driven by transpiration
(2023) Mondal, Shimul; Rahaman, Ebna Habib Md Shofiur; Asch, Folkard
Potassium is taken up actively by the plant, whereas sodium is often either competing for the same uptake mechanisms or uptake and distribution are driven by the transpirational volume flow in the shoots of plants grown under salinity. Reducing transpiration rate is regarded as an adaptation mechanism to reduce leaf tissue salt load. In combination with a high K uptake, plants may be able to maintain growth and are, thus, seen as salt‐tolerant. Little is known about these mechanisms in sweet potato (Ipomoea batatas L.). Therefore, cuttings of two sweet potato genotypes contrasting in salinity tolerance (CIP 188002.1, tolerant; CIP 189151.8, sensitive) were subjected to 0 and 50 mM NaCl root zone salinity in a hydroponic system and grown under low (0.76 kPa) and high (2.27 kPa) vapour pressure deficit (VPD) to create differences in transpiration. After 18 days of initial hydroponic growth, NaCl was added for another 33 days. Cumulative plant water loss and total uptake of Na, K and Cl were determined for all plants and treatments. Transpirational water loss was twice as high under high VPD as compared to low VPD conditions, but genotypic Na and Cl accumulation remained almost the same. In contrast to plants subjected to salt stress under low VPD conditions, genotypes under high VPD conditions differed significantly in transpiration. However, in both genotypes transpirational water loss from individual leaves and Na or Cl accumulation were not correlated, under high VPD younger leaves of CIP 188002.1 (tolerant) accumulated more than twice as much potassium than in CIP 189151.8 (sensitive). The distribution of the three ions across leaf positions and within one leaf position between petiole and leaf blade differed strongly between the two genotypes. Tolerant CIP 188002.1 accumulated up to five times more sodium and potassium in the leaf petioles in the middle‐aged and young leaf positions than in the leaf blade, whereas in sensitive CIP 189151.8 neither ion was preferentially accumulated in the petioles. This was independent of salinity treatment and VPD conditions. In contrast, hyperaccumulation of Cl in petioles only occurred under high VPD conditions in the petioles of the tolerant genotype, but not under low VPD conditions, indicating a VPD sensitivity for Cl distribution in sweet potato. While we conclude that transpirational volume flow is not a main driving force for Na and Cl uptake and distribution within the plant, we discuss potential pathways leading to the hyperaccumulation of sodium and potassium in the leaf petioles of the tolerant genotype. We suggest studies on HKT transporter activities in the petioles as an object of further studies in sweet potato.
Leaf gas exchange of lowland rice in response to nitrogen source and vapor pressure deficit
(2021) Vu, Duy Hoang; Stürz, Sabine; Pieters, Alejandro; Asch, Folkard
Background: In anaerobic lowland fields, ammonium (NH4+) is the dominant form of nitrogen (N) taken up by rice plants, however, with the large expansion of water-saving irrigation practices, nitrification is favored during drained periods, leading to an increased availability of nitrate (NO3−). Aim: Since the uptake and assimilation of the two N-sources differ in their demand of pho- tosynthates, leaf gas exchange may be subject to adjustments in response to N-sources, particularly at high evaporative demand, when stomatal conductance (gs ) is very sensitive. Methods: Three experiments were carried out to study leaf gas exchange of various low- land rice varieties in response to N-source at low and high vapor pressure deficit (VPD). In the first experiment, seedlings of 12 rice varieties were grown at high VPD for 3 weeks. From this, four rice varieties differing in gs and CO2 assimilation rate (A) were selected and grown for 2 weeks at low VPD, and after that, they were shifted to high VPD for 1 week, whereas in the third experiment, the same varieties were grown separately at low and high VPD conditions for 2 weeks. In all three experiments, plants were grown hydroponi- cally in nutrient solution with N-sources as sole NH4+ or NO3−. Results: At high VPD, NO3− nutrition led to a higher gs and A in four out of 12 vari- eties (IR64, BT7, NU838, and Nipponbare) relative to NH4+ nutrition, while no effect was observed at low VPD or after a short-term exposure to high VPD. Further, varieties with a high intrinsic water-use efficiency (WUEi; IR64 and BT7) showed the strongest response to N-source. Higher gs was partially supported by increased root/shoot ratio, but could not be fully explained by the measured parameters. However, higher A in NO3−-fed plants did not always result in increased plant dry matter, which is probably related to the higher energy demand for NO3− assimilation. Our results suggest that at high VPD, NO3− nutri- tion can improve leaf gas exchange in varieties having a high WUEi, provided a sufficient water supply. Conclusion: Therefore, intensified nitrification under water-saving irrigation measures may improve leaf gas exchange and the growth of rice plants under high transpirational demand. However, choice of variety seems crucial since large varietal differences were observed in response to N-source. Further, breeding strategies for genotypes adapted to aerobic soil conditions should consider responses to NO3−, potentially using gas exchange measurements as a screening tool.
Management of excess standing biomass in Argentinean grasslands to increase grass and livestock productivity
(2016) Kurtz, Ditmar Bernardo; Asch, Folkard
Grasslands are the main source of feed for cattle in Argentina. Standing dead biomass (SDB) accumulation threatens efficient resource use. To reduce dead biomass pools in Northern Argentinean rangelands, high impact grazing (HIG) was proposed as an alternative to both, mechanical elimination and the use of fire. However, the effects of HIG on grasslands’ biomass accumulation, diversity and forage quality are unknown. The effect and timing of HIG by cattle was therefore studied in grasslands of North Eastern Argentina. We introduced HIG monthly, on adjacent paddocks over the course of the year and its effects were studied for 12 months following the treatment. Dynamics of biomass re-growth, accumulation of green and standing dead biomass were studied. Additionally, the effects of HIG on plant species composition and the forage quality parameters were monitored and evaluated. The immediate effect of HIG was the reduction of the standing biomass by more than 95%. HIG generally improved the green to total biomass ratio and reduced the overall biomass in the paddocks. All sub-plots subjected to HIG showed a growth pattern anti-cyclic to control, with an active growth phase during autumn when the biomass in the control sub-plots decreased. Best results in terms of SDB reduction and dead to green biomass ratios were achieved after HIG in winter. HIG in autumn, however, reduced fodder availability and reduced from then on, grasslands productivity. Irrespective of the season HIG was applied, the grassland recovered completely with regard to species richness and diversity, the Shannon-Wiener diversity index (H) and the Shannon’s equitability index (E) did not reveal any difference within 12-month period after HIG. Our results suggest that HIG is not shifting plant species composition to a more ruderal strategy based plant community, but instead promotes previously established rather competitive and higher value fodder species. Our results indicate that HIG improves the nutritive value of the green biomass due to increased crude protein (CP), digestible organic matter (DOM), and (metabolizable energy) ME, but if applied in summer it has no evident positive effect. On an area basis, grassland subjected to HIG provided enough monthly ME and CP to meet the requirements of the current stocking density in Corrientes. HIG could be an alternative management practice, to fire and other mechanical SDB elimination, towards sustainable intensification. However, we are aware that long-term observations with repeated HIG should be analysed to detect possible delayed effects and interactions especially with seasonal variability.
Photosynthesis, quantum requirements, and energy demand for crop production in controlled environments
(2020) Schmierer, Marc; Asch, Folkard
In this work, energy costs for LED (light emitting diodes) lighting of a virtual plant stand exhibiting C3photosynthesis have been calculated via a model considering the quantum demand to build-up dry matter and energy efficiency of state-of-the art LEDs. Optimistic and pessimistic scenarios have been calculated by taking into account uncertainties regarding the H+/ATP stoichiometry of photosynthesis and different management strategies for indoor plant production. Energy costs were between 265 and 606 kWh for a production cycle ranging over 100 days and resulting in 2500 g dry matter per square meter for the optimistic and the pessimistic scenario respectively. The conversion efficiencies from electrical energy to energy bound in phytomass at the end of the production cycle were 2.07 % and 4.72 % (pessimistic and optimistic scenario, respectively). This was lower than the theoretical maximum values calculated for C3 plants that are given as 9.5 % in the literature. However, when the losses that occur during the conversion from electrical energy to light energy were excluded and only the efficiency of the conversion from incident light energy to phyto-energy was calculated, values increased to 4.0 and 9.1 %. The differences between the optimistic and the pessimistic scenario was caused by decreased photorespiration via carbon dioxide fertilization, which increased the conversion efficiencies by 38 %, followed by different assumptions about the H+ requirement for ATP production (34 %) and an increased rate of active absorption of light energy (24 %). Considering cumulative as well as feedback effects of all of the mentioned parameters, the conversion efficiency in the optimistic scenario was 2.3 times higher than in the pessimistic scenario. A system for measuring gas-exchange of whole plants or plant stands was developed in order to be able to investigate and improve the above mentioned management strategies in the future. CO2 sensors and temperature and humidity sensors were used to detect water loss and CO2. Readily available off-the-shelf electronic and mechanical materials were used in order to build a low-cost system that can be used in high throughput experiments. The results indicate that around 90 % of the transpirational water was detected by the system. We conclude that parts of the transpirational water condensed on the surfaces thus not leaving the chamber. When checking the accuracy of the H2O and CO2 sensors using an industry quality infrared gas analyser (IRGA), we found significant deviations from the values given by the IRGA and used this data for calibration of the CO2 sensors. The responses of the CO2-sensors were also linearly coupled to the H2O concentrations (about -0.1 % ppm CO2 / ppm H2O). A regression analysis was performed and the coefficients were used to correct the sensor readings. Since LEDs exhibit a higher energy-to-light ratio when operated at lower light levels, we tested a very small growing gibberellin (GA) deficient super dwarf rice genotype in a climate chamber experiment under different illumination levels and different levels of nitrogen supply to assess its suitability for crop production in artificial environments. A 25 % reduction in illumination lead to a 75 % reduction in yield, mainly due to a 60 % reduction in formed tillers and 20 % reduction in kernel weight, and an 80 % reduction in illumination caused total yield loss. Whereas leaf area under reduced illumination was significantly lower, only marginal changes in the dimensions of single leaves were observed. Photosynthesis at growing light conditions was not different between control plants and plants under 75 % illumination. This was explained by a higher photochemical efficiency under lower light conditions and a reduced mesophyll resistance. Therefore, we conclude that this genotype is an interesting candidate for crop production in vertical plant production systems, especially because of its short stature and the absence of shade avoidance mechanisms, such as leaf elongation, that would complicate production in small-height growing racks under low-light conditions. Nitrogen concentrations of 2.8 and 1.4 mmol L-1 in the nutrient solution lead to no differences in plant growth. We conclude that a nitrogen concentration of 1.4 mmol L-1 is sufficient for this genotype under the light intensities that were applied here. A software tool for simulations of photosynthesis in the python programming language was developed. The software implements a classical Farquhar-von CaemmererBerry (FvCB) model of leaf photosynthesis coupled with a model for the estimation of stomatal behaviour dependent on environmental conditions. We want to emphasize that the use of such models is essential to understand the complex interactions between plant growth, leaf photosynthesis and the environment. Knowledge on those relationships is the key to improve the efficiency of plant production in controlled environments.
Physiological mechanisms and growth responses of sweet potato subjected to salinity
(2023) Mondal, Shimul; Asch, Folkard
For the development of salt-tolerant sweet potato varieties, either through breeding or biotechnology, an appropriate salinity screening tool is necessary for the identification of tolerant or sensitive genotype. Our overall objectives for this study were to develop a suitable, reliable and rapid salinity screening tool in view of salt tolerance mechanism in sweet potato under salinity. To better understand the tolerance mechanisms; leaf level ion uptake and distribution patterns by transpirational water loss and leaf level ROS scavenging antioxidant enzyme activities were evaluated under salinity. Additionally, different ion extraction methods were tested which will contribute to the development of reliable salinity screening tool in sweet potato genotypes. All the experiments were conducted in the greenhouse and VPD (vapor pressure deficit) chambers of the Hans-Rutenberg Institute of Tropical Agricultural Sciences, University of Hohenheim, Germany, in a hydroponic system. Twelve genotypes of sweet potato were collected from Bangladesh Agricultural Research Institute (BARI) and used to evaluate salt thresholds with salt tolerance mechanisms for a wide range of salinity levels (0, 50, 100, and 150 mM NaCl). First, genotypic thresholds were determined for 12 sweet potato genotypes exposed to salinity, whereupon it was found that 75 mM root zone salinity (NaCl) was the threshold for sweet potato. The genotypic threshold was estimated from the dry matter accumulation that began to decrease under the influence of salinity. It was found that genotypic thresholds were negatively linearly correlated with the difference between tissue K content at 75 mM NaCl and tissue K content at controlled salinity in the root zone. This information is very important for identifying the salt tolerant and sensitive genotype of sweet potato. Second, the uptake and distribution of Na, K, and Cl ions by transpiration, across different-aged leaves, were studied to better understand the mechanisms of salt tolerance in sweet potato. Two different sweet potato genotypes were subjected to salt stress of 0 and 50 mM NaCl in artificially dry (VPD 2.27 kPa) and humid (VPD 0.76 kPa) chambers. We found that cumulative water loss per unit leaf area was twice as high at a VPD of 2.27 kPa, but Na uptake remained the same. No relationship was observed between water loss from individual leaves and Na or Cl uptake. About 30% more Na was distributed in the petioles of salt tolerant genotype compared to leaf blades, while the opposite was observed in salt sensitive sweet potato genotype and VPD had no effect on Na distribution. Third, the activities of ROS scavenging antioxidant enzymes were evaluated with respect to different leaf age, in two different genotypes of sweet potato under 100 mM salinity. In general, antioxidant enzymes in sweet potato do not respond to salt stress but are altered by the effects of leaf position, leaf age, duration of stress, and genotype. No effect of Na on antioxidant enzyme activities was found under salt stress in sweet potato leaves. However, the significant positive correlation between K concentration and the level of SOD (super oxide dismutase) in older leaves suggests that SOD contributes to the maintenance of a high K concentration to protect photosynthetic activity. In summary, this study shows that sweet potato responds differently to salinity depending on the genotype, and that the threshold beyond which yield decreases is 75 mM NaCl. Genotypic threshold strongly linked to high tissue K content under increasing salinity that suggests a salt tolerance mechanisms in sweet potato. Salt-tolerant sweet potatoes distribute significant amounts of Na and K in their petioles. Young leaves of the tolerant genotype contain more K under salt stress. GR and positive relationship between K concentration and SOD in salt tolerant genotypes indicate some tolerance mechanisms. So, a screening tool is proposed for sweet potato based on the genotypic ability to maintain high tissue K levels under increasing salinity level.
Potassium content is the main driver for salinity tolerance in sweet potato before tuber formation
(2022) Mondal, Shimul; Rahaman, Ebna Habib Md Shofiur; Asch, Folkard
Sweet potato (Ipomoea batatas L.) is mostly grown in Asia, which accounts for 86% of global production. However, its production is under threat by salinity. Little is known about genotypic responses to salinity in sweet potato. Phenotypic responses or physiological processes linked to salt tolerance that could be developed into a reliable screening tool to assist breeding have not yet been developed for sweet potato. In a hydroponic cultivation system, 12 contrasting sweet potato genotypes were subjected to 0, 50, 100 and 150 mM root zone salinity (RZS). Genotypic thresholds for dry matter accumulation and the genotypic slopes for additional dry matter reduction when the RZS increased beyond the genotypic threshold were determined. Sodium, chlorine and potassium (K) were determined from above‐ground biomass and correlated with the genotypic thresholds found. Genotypic threshold levels were linearly negatively correlated with the difference in tissue K content at 75 mM RZS and the tissue K content at control levels. Based on the genotypic ability to retain high tissue potassium levels under increasing RZS, we propose a screening tool based on these experimental data that can distinguish between salt‐tolerant and salt‐sensitive genotypes and indicate the potential yield level of the sweet potato genotypes.
Role of Bacillus spp. plant growth promoting properties in mitigating biotic and abiotic stresses in lowland rice (Oryza sativa L.)
(2023) Weinand, Tanja; El-Hasan, Abbas; Asch, Folkard
The ability of microorganisms to promote plant growth and mitigate abiotic and biotic stresses makes them an interesting tool for sustainable agriculture. Numerous studies aim to identify new, promising bacteria isolates. Traditional culture-based methods, which focus on selecting microorganisms with plant-growth-promoting traits, such as hormone production, nutrient solubilization, and antifungal properties, are widely used. This study aims to investigate the role of plant-growth-promoting properties in bacteria-mediated stress mitigation and the suitability of traditional culture-based methods as a screening tool for the identification of beneficial bacteria. To this end, we tested three endophytic Bacillus isolates, which have previously been shown to affect tolerance against iron toxicity in lowland rice, (a) for their effect on the resistance against brown spot disease, and (b) for plant-growth-promoting traits using common culture-based methods. Both B. pumilus isolates inhibited fungal growth in vitro and reduced brown spot disease in two of three rice cultivars in planta, although they tested negative for all plant-growth-promoting traits. While B. megaterium was negative for ACC deaminase activity and nutrient solubilization, it exhibited auxin production. Nevertheless, B. megaterium did not suppress brown spot disease in any of the three rice cultivars. This study shows that bacteria do not necessarily have to possess classical plant-growth-promoting properties in order to be beneficial to plants, and it emphasizes the limitation of common culture-based methods in effectively identifying beneficial bacteria. Moreover, our results highlight the significance of the interaction between bacteria and plant cultivars in determining the beneficial effects of Bacillus spp. on plants under biotic or abiotic stresses.

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